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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 2
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 plasma membrane: 18557835
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0718300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G00710.1 Os01t0718300-01 AT4G39400.1 18653891
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G597600.1 Wheat cytosol, mitochondrion 79.31 18.62
TraesCS2B01G604300.1 Wheat mitochondrion 79.31 18.62
TraesCS2A01G582500.1 Wheat cytosol, mitochondrion 79.31 18.62
EES11678 Sorghum cytosol 76.72 18.16
GSMUA_Achr1P15240_001 Banana cytosol 76.72 18.09
Zm00001d026653_P004 Maize plasma membrane 75.86 17.74
Zm00001d001780_P002 Maize endoplasmic reticulum, plasma membrane, vacuole 77.59 17.54
HORVU2Hr1G123650.2 Barley cytosol 78.45 16.02
Bra027800.1-P Field mustard cytosol 65.52 15.67
CDY64092 Canola cytosol 65.52 15.67
CDY68942 Canola plasma membrane 65.52 15.64
AT1G63500.1 Thale cress cytosol 65.52 15.61
Solyc11g064890.1.1 Tomato cytosol 64.66 15.4
PGSC0003DMT400024464 Potato cytosol 64.66 15.4
VIT_02s0025g03550.t01 Wine grape cytosol 64.66 15.37
CDY66348 Canola cytosol 63.79 15.35
Bra027646.1-P Field mustard cytosol 63.79 15.16
CDY25502 Canola cytosol 63.79 15.16
CDY34359 Canola cytosol 63.79 15.16
VIT_15s0046g02900.t01 Wine grape cytosol 62.93 14.87
Solyc12g099830.1.1 Tomato cytosol 62.07 14.81
AT5G41260.1 Thale cress cytosol 62.07 14.78
PGSC0003DMT400012025 Potato cytosol 61.21 14.61
KRH48161 Soybean cytosol 61.21 14.46
KRH65064 Soybean endoplasmic reticulum 61.21 14.46
CDY07203 Canola cytosol 59.48 14.26
Bra037353.1-P Field mustard cytosol 58.62 14.05
KRH41166 Soybean cytosol 58.62 13.91
AT4G00710.1 Thale cress cytosol 58.62 13.91
KRH59867 Soybean endoplasmic reticulum 58.62 13.91
CDX91898 Canola cytosol 58.62 13.85
Bra000962.1-P Field mustard cytosol 58.62 13.85
CDX74345 Canola cytosol 58.62 13.85
CDY51145 Canola cytosol 57.76 13.84
AT1G01740.2 Thale cress cytosol 55.17 13.25
Bra040944.1-P Field mustard mitochondrion 32.76 12.46
CDX90056 Canola cytosol 50.0 11.89
CDY15155 Canola cytosol 50.0 11.89
Os03t0825300-03 Rice plastid 50.0 11.89
Bra033237.1-P Field mustard cytosol 50.0 11.89
Os03t0132800-01 Rice plasma membrane 49.14 10.73
Os10t0571300-01 Rice plasma membrane 43.97 9.96
CDX75149 Canola cytosol, mitochondrion, peroxisome 0.86 1.39
CDY64342 Canola extracellular 0.0 0.0
CDY65190 Canola cytosol 0.0 0.0
CDY20930 Canola extracellular, mitochondrion 0.0 0.0
Os10t0542800-01 Rice cytosol, plasma membrane 0.0 0.0
VIT_17s0000g08700.t01 Wine grape extracellular, plasma membrane 0.0 0.0
Protein Annotations
EnsemblPlants:Os04t0684200-01EnsemblPlantsGene:Os04g0684200Gene3D:3.30.200.20PANTHER:PTHR27001PANTHER:PTHR27001:SF126UniParc:UPI0003939204
MapMan:35.1:::::
Description
RECEPTOR-LIKE CYTOPLASMIC KINASE 173Brassinosteroid (BR) signaling kinase, Regulation of BR signaling (Os04t0684200-01)
Coordinates
chr4:+:34943036..34949637
Molecular Weight (calculated)
12912.2 Da
IEP (calculated)
7.972
GRAVY (calculated)
-0.597
Length
116 amino acids
Sequence
(BLAST)
001: MGGRVSKAVA CCCCRSQHHG VVVESSEKTA EEDHGESYEL PAFQEFSFEQ LRLATSGFAV ENIVSEHGEK APNVVYKGKL DAQRRIAVKR FNRSAWPDPR
101: QFLEEAKSVG QLRSKG
Best Arabidopsis Sequence Match ( AT1G63500.1 )
(BLAST)
001: MGCEVSKLCA FCCVSDPEGS NHGVTGLDED RRGEGNDLPQ FREFSIETLR NATSGFATEN IVSEHGEKAP NVVYKGKLDN QRRIAVKRFN RKAWPDSRQF
101: LEEAKAVGQL RNYRMANLLG CCYEGEERLL VAEFMPNETL AKHLFHWESQ PMKWAMRLRV ALHIAQALEY CTGKGRALYH DLNAYRVLFD DDSNPRLSCF
201: GLMKNSRDGK SYSTNLAFTP PEYLRTGRVT PESVMYSYGT LLLDLLSGKH IPPSHALDLI RDRNIQMLID SCLEGQFSSD DGTELIRLAS RCLQYEPRER
301: PNPKSLVTAM IPLQKDLETP SHQLMGIPSS ASTTPLSPLG EACLRTDLTA IHEILEKLSY KDDEGAATEL SFQMWTNQMQ DSLNFKKKGD VAFRHKEFAN
401: AIDCYSQFIE GGTMVSPTVY ARRSLCYLMN EMPQEALNDA MQAQVISPAW HIASYLQAVA LSALGQENEA HAALKDGSML ESKRNRL
Arabidopsis Description
BSK7BSK7 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ26]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.