CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03947
KRH53532
KRH57220
KRH64403

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	KRH03947	AT4G24840.1	21798944
AT5G11090.1	KRH57220	AT4G24840.1	21798944
AT5G11090.1	KRH53532	AT5G53060.1	21798944
AT5G11090.1	KRH64403	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05207	Soybean	plastid	78.06	75.0
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	48.47	64.19
KRH52394	Soybean	plastid	64.29	58.6
PGSC0003DMT400096763	Potato	plastid	56.12	54.73
CDX87091	Canola	plastid	54.08	54.08
PGSC0003DMT400073335	Potato	plastid	52.04	53.97
KRH37826	Soybean	mitochondrion, plastid	52.55	53.93
VIT_09s0002g08540.t01	Wine grape	plastid	55.1	53.73
Bra028552.1-P	Field mustard	mitochondrion, plastid	52.04	53.68
CDX88167	Canola	plastid	50.0	53.26
KRH12846	Soybean	mitochondrion	51.53	53.16
KRH03579	Soybean	mitochondrion	54.08	53.0
Bra006088.1-P	Field mustard	plastid	58.67	53.0
KRH20230	Soybean	mitochondrion	55.1	52.94
CDX70380	Canola	mitochondrion, plastid	59.18	52.49
Bra008991.1-P	Field mustard	nucleus, plastid	58.16	52.05
Bra036540.1-P	Field mustard	plastid	50.51	51.83
CDX78410	Canola	mitochondrion, plastid	58.67	51.8
Solyc06g068330.1.1	Tomato	plastid	52.04	51.78
AT5G11090.1	Thale cress	plastid	57.14	51.61
CDX69786	Canola	mitochondrion, plastid	51.02	51.55
AT5G25280.3	Thale cress	plastid	57.65	51.36
CDY19808	Canola	plastid	50.0	50.78
CDX97080	Canola	mitochondrion, plastid	51.02	50.51
KRH09694	Soybean	plastid	41.33	50.31
Bra009829.1-P	Field mustard	plastid	53.06	50.24
CDX80497	Canola	plastid	52.55	50.0
CDY51107	Canola	plastid	51.02	43.86
KRH61721	Soybean	plastid	59.69	43.82
CDX85730	Canola	plastid	50.0	42.06
KRH03578	Soybean	nucleus, plastid	19.9	38.24
KRH20233	Soybean	plastid	20.92	37.96
GSMUA_Achr1P09980_001	Banana	plastid	36.22	31.7
KRH37829	Soybean	plastid	19.9	30.71

Protein Annotations

EMBL:ACUP02008661	EnsemblPlants:KRH15826	EnsemblPlantsGene:GLYMA_14G113400	EntrezGene:100814735	ncoils:Coil	PANTHER:PTHR33132
PANTHER:PTHR33132:SF12	ProteinID:KRH15826	ProteinID:KRH15826.1	SEG:seg	UniParc:UPI000233BC98	UniProt:K7M695
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:13365240..13366605

Molecular Weight (calculated)

21806.6 Da

IEP (calculated)

12.279

GRAVY (calculated)

-0.803

Length

196 amino acids

Sequence
(BLAST)

001: MASSSRTKSS GPVLRSSSLS HSNSFCSYST SNAPFHSPSS SFFNSHVASR STSPTRVNLF RAAPPPSHSV RFALDRSISP NRSHVIARKH QHHRHVTAQK
101: KTCMCSPTTH PGSFRCSLHK NNNQNAQTGS FPSNRLNMRR SAMKNSLVRI GGVEGEWVKR ALTALIRPSS HQQRRRSAFE PRPSRLSIMS KAEEEE

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.