Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 4
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88167 | Canola | plastid | 65.91 | 78.8 |
| Bra009829.1-P | Field mustard | plastid | 73.64 | 78.26 |
| CDX80497 | Canola | plastid | 72.73 | 77.67 |
| AT5G11090.1 | Thale cress | plastid | 75.45 | 76.5 |
| Bra036540.1-P | Field mustard | plastid | 65.91 | 75.92 |
| CDY19808 | Canola | plastid | 65.91 | 75.13 |
| CDX87091 | Canola | plastid | 62.27 | 69.9 |
| KRH52394 | Soybean | plastid | 60.45 | 61.86 |
| KRH15826 | Soybean | plastid | 51.36 | 57.65 |
| Solyc03g117290.1.1 | Tomato | mitochondrion, plastid | 38.18 | 56.76 |
| KRH05207 | Soybean | plastid | 49.55 | 53.43 |
| PGSC0003DMT400073335 | Potato | plastid | 45.45 | 52.91 |
| VIT_09s0002g08540.t01 | Wine grape | plastid | 47.27 | 51.74 |
| Solyc06g068330.1.1 | Tomato | plastid | 45.0 | 50.25 |
| PGSC0003DMT400096763 | Potato | plastid | 45.45 | 49.75 |
| KRH61721 | Soybean | plastid | 57.73 | 47.57 |
| AT5G20370.1 | Thale cress | mitochondrion | 28.18 | 35.43 |
| GSMUA_Achr1P09980_001 | Banana | plastid | 34.55 | 33.93 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832600 | ProteinID:AED93421.1 | ProteinID:AED93422.1 | ProteinID:ANM71028.1 | ArrayExpress:AT5G25280 |
| EnsemblPlantsGene:AT5G25280 | RefSeq:AT5G25280 | TAIR:AT5G25280 | RefSeq:AT5G25280-TAIR-G | EnsemblPlants:AT5G25280.3 | EMBL:AY049253 |
| EMBL:AY052194 | EMBL:AY060488 | Unigene:At.26197 | GO:GO:0008150 | RefSeq:NP_001332588.1 | RefSeq:NP_197910.1 |
| RefSeq:NP_851072.1 | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF12 | UniProt:Q93WB2 | UniParc:UPI00000AA4B5 | SEG:seg |
Description
AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
Coordinates
chr5:+:8773789..8776594
Molecular Weight (calculated)
24110.1 Da
IEP (calculated)
12.267
GRAVY (calculated)
-0.800
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.