Factsheet for PGSC0003DMT400073335

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008290
PGSC0003DMT400020233
PGSC0003DMT400047665
PGSC0003DMT400067640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	PGSC0003DMT400067640	AT4G24840.1	21798944
AT5G11090.1	PGSC0003DMT400008290	AT4G31920.1	18642946
AT5G11090.1	PGSC0003DMT400020233	AT4G31920.1	18642946
AT5G11090.1	PGSC0003DMT400047665	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068330.1.1	Tomato	plastid	93.65	89.85
PGSC0003DMT400096763	Potato	plastid	68.25	64.18
PGSC0003DMT400020263	Potato	plastid	50.79	58.54
PGSC0003DMT400078959	Potato	mitochondrion	59.26	54.37
VIT_09s0002g08540.t01	Wine grape	plastid	57.14	53.73
KRH15826	Soybean	plastid	53.97	52.04
KRH52394	Soybean	plastid	57.67	50.7
Bra028552.1-P	Field mustard	mitochondrion, plastid	50.79	50.53
PGSC0003DMT400067139	Potato	plastid	53.97	50.0
CDX88167	Canola	plastid	48.68	50.0
Bra036540.1-P	Field mustard	plastid	50.26	49.74
CDX87091	Canola	plastid	50.79	48.98
CDY19808	Canola	plastid	49.21	48.19
KRH05207	Soybean	plastid	51.85	48.04
CDX80497	Canola	plastid	51.32	47.09
CDX69786	Canola	mitochondrion, plastid	48.15	46.91
Bra009829.1-P	Field mustard	plastid	51.32	46.86
AT5G11090.1	Thale cress	plastid	53.44	46.54
CDX97080	Canola	mitochondrion, plastid	48.68	46.46
Bra008991.1-P	Field mustard	nucleus, plastid	53.44	46.12
Bra006088.1-P	Field mustard	plastid	52.38	45.62
AT5G25280.3	Thale cress	plastid	52.91	45.45
CDX78410	Canola	mitochondrion, plastid	52.38	44.59
PGSC0003DMT400079003	Potato	plastid	23.28	44.0
CDX70380	Canola	mitochondrion, plastid	51.32	43.89
CDX85730	Canola	plastid	48.68	39.48
CDY51107	Canola	plastid	47.62	39.47
KRH61721	Soybean	plastid	53.97	38.2
GSMUA_Achr1P09980_001	Banana	plastid	32.8	27.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400073335	EnsemblPlantsGene:PGSC0003DMG400028501	EntrezGene:102603646	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	PGSC:PGSC0003DMG400028501
RefSeq:XP_006356235.1	SEG:seg	UniParc:UPI000296787E	UniProt:M1CRU9	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028501]

Coordinates

chr6:-:49910282..49911132

Molecular Weight (calculated)

21185.0 Da

IEP (calculated)

12.143

GRAVY (calculated)

-0.850

Length

189 amino acids

Sequence
(BLAST)

001: MELSSSKNKL HHNYQRSVSP SGRFCSSTIS SSTFSTQTSD WLTRSTSPTR VNLRRSVSPS PSVRFFSSPS RSISVFPRKP QQNSHPLPSA SNQKKHCTCS
101: PTTHPGSFRC SLHKNTTNRS RGQSYHSSHQ LNMRRSAMTN SLVRIGTVEG ELVKRALAAL IRPSSHQLRR RCDFQPKPSR LSVMSKAED

Best Arabidopsis Sequence Match ( AT5G25280.2 )
(BLAST)

001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL

Arabidopsis Description

AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.