Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065900.2.1 | Tomato | plastid | 39.71 | 87.1 |
| PGSC0003DMT400096763 | Potato | plastid | 54.41 | 55.22 |
| PGSC0003DMT400020263 | Potato | plastid | 43.63 | 54.27 |
| PGSC0003DMT400073335 | Potato | plastid | 50.0 | 53.97 |
| PGSC0003DMT400078959 | Potato | mitochondrion | 52.45 | 51.94 |
| PGSC0003DMT400079003 | Potato | plastid | 21.08 | 43.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067139 | EnsemblPlantsGene:PGSC0003DMG400026100 | EntrezGene:102581215 | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF12 | PGSC:PGSC0003DMG400026100 |
| RefSeq:XP_006353669.1 | RefSeq:XP_015166913.1 | SEG:seg | UniParc:UPI000296B46B | UniProt:M1CGR9 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026100]
Coordinates
chr6:-:45816546..45821022
Molecular Weight (calculated)
22592.9 Da
IEP (calculated)
12.243
GRAVY (calculated)
-0.562
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSSRRPSG SVLLKSAFER SISPTGRFCN TTTTATDAMS FASYSNSSFY SSPSTGCFNR SASPTRVNLH ALAPVNSTPS VRFSIDRSIS PRRSMAVSQR
101: DQVVRKQIPK RTCLCSPTTH PGSFRCSMHK NVKNIPSISY SPSRLNARRS AMTNSLVRIW SVEGDLVKRA LAALIRPSSH HQRRRGDFQP RPSRLSRMSK
201: ADNL
101: DQVVRKQIPK RTCLCSPTTH PGSFRCSMHK NVKNIPSISY SPSRLNARRS AMTNSLVRIW SVEGDLVKRA LAALIRPSSH HQRRRGDFQP RPSRLSRMSK
201: ADNL
001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
Arabidopsis Description
AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.