Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009829.1-P | Field mustard | plastid | 96.2 | 85.51 |
| CDX80497 | Canola | plastid | 94.02 | 83.98 |
| CDY19808 | Canola | plastid | 71.74 | 68.39 |
| CDX69786 | Canola | mitochondrion, plastid | 71.2 | 67.53 |
| AT5G25280.3 | Thale cress | plastid | 78.8 | 65.91 |
| CDX97080 | Canola | mitochondrion, plastid | 70.65 | 65.66 |
| CDX87091 | Canola | plastid | 66.3 | 62.24 |
| CDX78410 | Canola | mitochondrion, plastid | 73.91 | 61.26 |
| CDX70380 | Canola | mitochondrion, plastid | 71.74 | 59.73 |
| KRH52394 | Soybean | plastid | 64.13 | 54.88 |
| Solyc03g117290.1.1 | Tomato | mitochondrion, plastid | 42.39 | 52.7 |
| KRH15826 | Soybean | plastid | 53.26 | 50.0 |
| CDY51107 | Canola | plastid | 60.87 | 49.12 |
| KRH05207 | Soybean | plastid | 54.35 | 49.02 |
| CDX85730 | Canola | plastid | 61.96 | 48.93 |
| PGSC0003DMT400073335 | Potato | plastid | 50.0 | 48.68 |
| VIT_09s0002g08540.t01 | Wine grape | plastid | 50.54 | 46.27 |
| Solyc06g068330.1.1 | Tomato | plastid | 48.91 | 45.69 |
| PGSC0003DMT400096763 | Potato | plastid | 49.46 | 45.27 |
| KRH61721 | Soybean | plastid | 60.87 | 41.95 |
| CDY68410 | Canola | plastid | 29.89 | 35.95 |
| CDY45090 | Canola | plastid | 29.35 | 35.29 |
| CDX70925 | Canola | plastid | 26.63 | 33.56 |
| GSMUA_Achr1P09980_001 | Banana | plastid | 38.04 | 31.25 |
| CDY51848 | Canola | plastid | 27.72 | 30.54 |
| CDX92466 | Canola | plastid | 23.91 | 24.86 |
| CDY56862 | Canola | plastid | 22.83 | 22.22 |
Protein Annotations
| EnsemblPlants:CDX88167 | EnsemblPlantsGene:GSBRNA2T00147623001 | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF12 | ProteinID:CDX88167 | ProteinID:CDX88167.1 |
| SEG:seg | UniParc:UPI0004EE2916 | MapMan:35.2 | : | : | : |
Description
BnaA06g27580D
Coordinates
chrLK031854:+:1088723..1090415
Molecular Weight (calculated)
20025.5 Da
IEP (calculated)
12.338
GRAVY (calculated)
-0.714
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFNSSKTRS SGPVLRSVSP SGRFYGGVSS PSSSGFASST SSSFSSTSFF SNNRQQHHPP HRSASPTRVN LFTSTPLNHG NKIPDSRRRC MCSPTTHPGS
101: FRCSLHKNVA NPHGQGAATY STNGLNMRRS AMTNSLVRIG GVEGEWVRRA LTTLIRPSSH QLKRRSAYQP RPSRLSSMSK ADDV
101: FRCSLHKNVA NPHGQGAATY STNGLNMRRS AMTNSLVRIG GVEGEWVRRA LTTLIRPSSH QLKRRSAYQP RPSRLSSMSK ADDV
001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN
Arabidopsis Description
At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.