CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03947
KRH53532
KRH57220
KRH64403

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	KRH03947	AT4G24840.1	21798944
AT5G11090.1	KRH57220	AT4G24840.1	21798944
AT5G11090.1	KRH53532	AT5G53060.1	21798944
AT5G11090.1	KRH64403	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52394	Soybean	plastid	70.04	86.98
CDX88167	Canola	plastid	41.95	60.87
KRH15826	Soybean	plastid	43.82	59.69
AT5G11090.1	Thale cress	plastid	48.31	59.45
Bra006088.1-P	Field mustard	plastid	48.31	59.45
CDX97080	Canola	mitochondrion, plastid	43.82	59.09
Bra008991.1-P	Field mustard	nucleus, plastid	47.94	58.45
CDX69786	Canola	mitochondrion, plastid	42.32	58.25
CDX78410	Canola	mitochondrion, plastid	48.31	58.11
Bra009829.1-P	Field mustard	plastid	44.94	57.97
AT5G25280.3	Thale cress	plastid	47.57	57.73
Bra036540.1-P	Field mustard	plastid	41.2	57.59
CDY19808	Canola	plastid	41.57	57.51
CDX80497	Canola	plastid	44.19	57.28
KRH05207	Soybean	plastid	43.45	56.86
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	31.46	56.76
CDX70380	Canola	mitochondrion, plastid	46.82	56.56
Bra028552.1-P	Field mustard	mitochondrion, plastid	40.07	56.32
KRH37826	Soybean	mitochondrion, plastid	39.33	54.97
CDX87091	Canola	plastid	39.7	54.08
PGSC0003DMT400073335	Potato	plastid	38.2	53.97
VIT_09s0002g08540.t01	Wine grape	plastid	40.07	53.23
KRH12846	Soybean	mitochondrion	37.45	52.63
Solyc06g068330.1.1	Tomato	plastid	38.58	52.28
KRH20230	Soybean	mitochondrion	39.7	51.96
KRH03579	Soybean	mitochondrion	37.83	50.5
PGSC0003DMT400096763	Potato	plastid	37.83	50.25
KRH09694	Soybean	plastid	29.96	49.69
CDX85730	Canola	plastid	40.82	46.78
CDY51107	Canola	plastid	38.95	45.61
KRH03578	Soybean	nucleus, plastid	14.23	37.25
KRH20233	Soybean	plastid	14.61	36.11
GSMUA_Achr1P09980_001	Banana	plastid	26.59	31.7
KRH37829	Soybean	plastid	14.61	30.71

Protein Annotations

EMBL:ACUP02002183	EnsemblPlants:KRH61721	EnsemblPlantsGene:GLYMA_04G064600	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:KRH61721
ProteinID:KRH61721.1	SEG:seg	UniParc:UPI0006EDBA02	UniProt:A0A0R0K8U2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:5375638..5377740

Molecular Weight (calculated)

29674.2 Da

IEP (calculated)

11.939

GRAVY (calculated)

-0.473

Length

267 amino acids

Sequence
(BLAST)

001: MASSSSRTKS SGPVLRSLSP SSRFCSYTTS KTPFSSPSSA FASSTSSGFS SSTFFNQPRQ HHSQSHHSHH RAASPTRVNL YSPAPLSSGV RFSIDPRSIS
101: PNRSISNQII TTKNNRPISG QKKTCMCSPT MHPGSFRCSL HKNIGNNNHH SDSYPSNRLN MRRSAMKNSL VRIGGVEGEW VKRALTALIR PSSHQQRRRA
201: GFEPRPTSSN LLYFPSVNGR RLHLACGWFR SVIWDRSITR DAVTISVTFV QLLCVWCQLF ICGDVIM

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.