Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009378.1-P | Field mustard | cytosol | 18.43 | 9.18 |
| Bra022450.1-P | Field mustard | cytosol | 16.08 | 8.82 |
Protein Annotations
| EnsemblPlants:Bra009377.1 | EnsemblPlants:Bra009377.1-P | EnsemblPlantsGene:Bra009377 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1620 | SEG:seg |
| UniParc:UPI0002547666 | UniProt:M4CYT0 | MapMan:35.1 | : | : | : |
Description
AT5G09320 (E=3e-100) VPS9B | VPS9B
Coordinates
chrA10:-:16394351..16395185
Molecular Weight (calculated)
29284.8 Da
IEP (calculated)
9.258
GRAVY (calculated)
-0.253
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGIGLRGEI LRLGFTPRRG VSGRSPVLRR AMVIKMRDRS KNRKPLQRGR MLSIEAIQAV QALKRANPPP PSTSPSSSSS MLDRVIDSKI RRLLKFDMVA
101: VLRELLRQNE CSLSLKVFEE IRKEYWYKPQ VRLYADMIAV MADNSLIEEL NYLYAAMKSE KGLVADTESF NTLLVILLNH KLFELVMDCY AFMQSIGYEP
201: DRTSFRILVQ GLESNGEMGL SGIVRQDAHE YYGESLEFTE EVEDISSLLI PQWRR
101: VLRELLRQNE CSLSLKVFEE IRKEYWYKPQ VRLYADMIAV MADNSLIEEL NYLYAAMKSE KGLVADTESF NTLLVILLNH KLFELVMDCY AFMQSIGYEP
201: DRTSFRILVQ GLESNGEMGL SGIVRQDAHE YYGESLEFTE EVEDISSLLI PQWRR
001: MEGIGLRSCG DDILRLGFKL RGGTGGRIQI LQRAMVIKMR DRSKNRKPLQ RGRMLSIEAI QAVQALKRAN PLLPPPPVPS TSTTSSSSAL LDRVIISKFR
101: RLLKFDMVAV LRELLRQNEC SLALKVFEEI RKEYWYKPQV RMYTDMITVM ADNSLMEEVN YLYSAMKSEK GLMAEIEWFN TLLTILLNHK LFDLVMDCYA
201: FMQSIGYEPD RASFRVLVLG LESNGEMGLS AIVRQDAHEY YGESLEFIEE DEEISSGTSV LI
101: RLLKFDMVAV LRELLRQNEC SLALKVFEEI RKEYWYKPQV RMYTDMITVM ADNSLMEEVN YLYSAMKSEK GLMAEIEWFN TLLTILLNHK LFDLVMDCYA
201: FMQSIGYEPD RASFRVLVLG LESNGEMGLS AIVRQDAHEY YGESLEFIEE DEEISSGTSV LI
Arabidopsis Description
At5g09320 [Source:UniProtKB/TrEMBL;Acc:Q8L797]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.