Factsheet for TraesCS4A01G343800.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G530300.1	Wheat	cytosol	97.44	97.71
TraesCS5B01G530100.1	Wheat	cytosol	96.87	97.14
TraesCS5D01G529100.1	Wheat	cytosol	96.87	96.87
KXG37171	Sorghum	cytosol	78.63	78.86
Zm00001d034796_P005	Maize	cytosol	77.78	78.0
HORVU5Hr1G120090.3	Barley	cytosol	85.47	77.72
Os03t0842700-03	Rice	cytosol	30.77	74.48
Zm00001d007243_P001	Maize	endoplasmic reticulum	32.19	65.7
VIT_18s0089g01070.t01	Wine grape	cytosol	31.62	61.67
Zm00001d047622_P002	Maize	cytosol	27.07	61.29
GSMUA_Achr6P18560_001	Banana	cytosol	56.13	52.81
Zm00001d004146_P001	Maize	cytosol	37.04	48.51
KRH62573	Soybean	endoplasmic reticulum, extracellular	48.15	42.68
Zm00001d020119_P001	Maize	cytosol	15.38	40.91
Zm00001d046521_P001	Maize	nucleus	25.64	37.97
Zm00001d004675_P001	Maize	cytosol	23.36	37.44
TraesCS4A01G088300.1	Wheat	cytosol	42.73	31.78
CDY24606	Canola	cytosol, mitochondrion, nucleus	4.84	15.18

Protein Annotations

EnsemblPlants:TraesCS4A01G343800.3	EnsemblPlantsGene:TraesCS4A01G343800	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204	PFscan:PS51205
SMART:SM00167	SUPFAM:SSF109993	MapMan:22.8.3.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:623400168..623402548

Molecular Weight (calculated)

39296.1 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.225

Length

351 amino acids

Sequence
(BLAST)

001: MESPTSAASR VDFYGFLDRM RRPEAAGLFR SIKSFLASLS LEEPSAEADG GRVQAFFAEM EAAIRGHPLW ADATHQEIDH ALEGLEKYIM TKLFDRTFVA
101: SPEDAAADAE VSDKIGLLQR FVRPHHLDIP KVLNNEASWL IAVKELQKIN SFKSPWEKLL CMMSCCQVIN NLLLNVSMTN DRTPSGADEF LPILIYITIK
201: ANPPQLHSNL KFVQLFRRET KLVSEVEYYL TNLISAKMFI INVNGQSLSM EESEFQKHME SATLGTQMSV AGPSSPQGLA TSTRGLQKQI DAEAGSRFPF
301: MDSETENLTP AELKQLHGLY RKTVTRYTLL SKALRKLSID EDQLLASVDD S

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.