Factsheet for VIT_03s0038g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34740.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24354	Soybean	nucleus, plastid	76.12	78.27
KRH39820	Soybean	nucleus, plastid	76.63	77.84
Bra011558.1-P	Field mustard	plastid	72.16	75.68
CDY46205	Canola	plastid	72.16	75.27
Bra001980.1-P	Field mustard	plastid	71.82	75.04
AT4G34740.1	Thale cress	plastid	72.16	74.87
AT2G16570.1	Thale cress	plastid	72.51	74.56
Solyc01g110520.2.1	Tomato	nucleus, plastid	73.88	74.52
PGSC0003DMT400004095	Potato	plastid	74.06	74.18
KRH24353	Soybean	cytosol, plastid	15.98	73.81
KRH39819	Soybean	plastid	64.78	73.78
KRH60750	Soybean	extracellular, plastid	71.31	72.94
CDY42591	Canola	cytosol	58.59	70.45
CDY41949	Canola	cytosol	58.08	70.27
CDY61829	Canola	cytosol, plastid	72.16	69.19
Solyc01g088360.2.1	Tomato	plastid	64.43	68.06
AT4G38880.1	Thale cress	plastid	62.03	67.86
PGSC0003DMT400089372	Potato	plastid	64.09	67.33
Bra011888.1-P	Field mustard	plastid	60.65	65.01
GSMUA_Achr3P22240_001	Banana	cytosol	49.83	64.73
GSMUA_Achr4P16330_001	Banana	cytosol	54.3	64.36
Zm00001d038332_P001	Maize	plastid	55.33	59.3
Zm00001d010197_P001	Maize	plastid	54.98	59.26
EES18281	Sorghum	plastid	54.98	58.93
Os05t0430800-01	Rice	plastid	54.47	58.6
GSMUA_AchrUn_...	Banana	plastid	53.61	58.21
TraesCS3D01G376600.1	Wheat	plastid	54.64	58.03
Zm00001d042673_P001	Maize	plastid	54.12	57.9
TraesCS3B01G415900.1	Wheat	plastid	53.78	57.43
OQU87957	Sorghum	plastid	53.78	57.22
TraesCS1B01G279800.1	Wheat	plastid	53.78	57.22
TraesCS1D01G269400.1	Wheat	plastid	53.44	57.06
TraesCS3A01G383500.1	Wheat	plastid	53.61	56.73
TraesCS1A01G269300.1	Wheat	plastid	53.09	56.49
Os01t0873100-01	Rice	plasma membrane	10.14	56.19
HORVU1Hr1G074460.2	Barley	plastid	53.44	55.14
CDX75458	Canola	plastid	73.02	54.98
HORVU3Hr1G082280.1	Barley	plastid	52.92	50.08

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	EntrezGene:100250446	wikigene:100250446	Gene3D:3.40.50.2020	Gene3D:3.60.20.10
MapMan:6.1.1.1	MEROPS:C44.001	ProteinID:CCB60696	ProteinID:CCB60696.1	UniProt:F6I180	EMBL:FN596508
InterPro:GATase_2_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0005488	GO:GO:0006139
GO:GO:0006164	GO:GO:0006189	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009116	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0046872	GO:GO:0051536
InterPro:IPR017932	InterPro:IPR029055	EntrezGene:LOC100250446	wikigene:LOC100250446	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N
PFAM:PF00156	PFAM:PF13537	PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278
PANTHER:PTHR11907	PANTHER:PTHR11907:SF14	InterPro:PurF	InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235
TIGR:TC60449	TIGRFAMs:TIGR01134	UniParc:UPI00015C8BC4	ArrayExpress:VIT_03s0038g00880	EnsemblPlantsGene:VIT_03s0038g00880	EnsemblPlants:VIT_03s0038g00880.t01
unigene:Vvi.1447	RefSeq:XP_002270024	RefSeq:XP_002270024.1	SEG:seg	:	:

Description

Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:F6I180]

Coordinates

chr3:-:702486..704460

Molecular Weight (calculated)

62902.2 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.033

Length

582 amino acids

Sequence
(BLAST)

001: MAASSNFSSI SRSGEKPYSL SVNPSKAPVC FSPKTLQKPS FVHRPSSCQP LSQAHKPAVV LSSKNPIAGV VSAGNADPDS GFVLSDHDEK PREECGVVGI
101: YGDPEASRLC YLALHALQHR GQEGAGIVTV NNNVLQSITG VGLVSDVFNQ SKLEQLPGDS AIGHVRYSTA GSSMLKNVQP FVAGYRFGSV GVAHNGNLVN
201: YRALRAKLED SGSIFNTSSD TEVVLHLIAI SKARPFFLRI VDACEQLQGA YSMVFLTEDK LVAVRDPYGF RPLVMGRRSN GAVVFASETC ALDLIEATYE
301: REVYPGEVLV VDKDGVQSLC LMPHPEPKKC IFEHIYFSMP NSVVFGKSVY ESRRAFGEIL ATEAPVDCDV VIAVPDSGVV AALGFAAKAG VAFQQGLIRS
401: HYVGRTFIEP SQKIRDFGVK LKLSPVRAVL EGKRVVVVDD SIVRGTTSSK IVRLIKESGA KEVHMRIASP PIIASCYYGV DTPSPEELIS NRMSVEEIRE
501: FIGCDSLAFL PINSMKKLYD EEAPNYCYAC FTGNYPVLPT ELKVKRVGDF VDDGLNGSIE SIDGGWVQAS RNQVAQKVAS SS

Best Arabidopsis Sequence Match ( AT4G34740.1 )
(BLAST)

001: MAATSSISSS LSLNAKPNKL SNNNNNNKPH RFLRNPFLNP SSSSFSPLPA SISSSSSSPS FPLRVSNPLT LLAADNDDYD EKPREECGVV GIYGDSEASR
101: LCYLALHALQ HRGQEGAGIV TVSKDKVLQT ITGVGLVSEV FSESKLDQLP GDIAIGHVRY STAGSSMLKN VQPFVAGYRF GSVGVAHNGN LVNYTKLRAD
201: LEENGSIFNT SSDTEVVLHL IAISKARPFF MRIVDACEKL QGAYSMVFVT EDKLVAVRDP HGFRPLVMGR RSNGAVVFAS ETCALDLIEA TYEREVYPGE
301: VLVVDKDGVK CQCLMPHPEP KQCIFEHIYF SLPNSIVFGR SVYESRHVFG EILATESPVD CDVVIAVPDS GVVAALGYAA KAGVAFQQGL IRSHYVGRTF
401: IEPSQKIRDF GVKLKLSPVR GVLEGKRVVV VDDSIVRGTT SSKIVRLLRE AGAKEVHMRI ASPPIIASCY YGVDTPSSNE LISNRMSVDE IRDYIGCDSL
501: AFLSFETLKK HLGEDSRSFC YACFTGDYPV KPTEDKVKRG GDFIDDGLVG GIHNIEGGWV R

Arabidopsis Description

ASE2Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UYQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.