Factsheet for Zm00001d042673_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34740.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT4G34740.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT4G34740.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT4G34740.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0873100-01	Rice	plasma membrane	18.2	94.29
OQU87957	Sorghum	plastid	93.01	92.5
Zm00001d038332_P001	Maize	plastid	81.99	82.14
Zm00001d010197_P001	Maize	plastid	80.33	80.93
TraesCS3B01G415900.1	Wheat	plastid	81.07	80.92
TraesCS3D01G376600.1	Wheat	plastid	80.51	79.93
TraesCS3A01G383500.1	Wheat	plastid	80.15	79.27
HORVU3Hr1G082280.1	Barley	plastid	80.33	71.06
GSMUA_Achr3P22240_001	Banana	cytosol	57.72	70.09
GSMUA_Achr4P16330_001	Banana	cytosol	62.13	68.84
GSMUA_AchrUn_...	Banana	plastid	61.21	62.13
CDY41949	Canola	cytosol	52.39	59.25
CDY42591	Canola	cytosol	51.65	58.06
KRH39819	Soybean	plastid	54.23	57.73
Bra001980.1-P	Field mustard	plastid	58.82	57.45
KRH60750	Soybean	extracellular, plastid	59.93	57.29
CDY46205	Canola	plastid	57.9	56.45
Bra011558.1-P	Field mustard	plastid	57.35	56.22
AT2G16570.1	Thale cress	plastid	58.09	55.83
AT4G34740.1	Thale cress	plastid	57.54	55.79
KRH24353	Soybean	cytosol, plastid	12.87	55.56
KRH39820	Soybean	nucleus, plastid	57.72	54.8
KRH24354	Soybean	nucleus, plastid	56.8	54.59
AT4G38880.1	Thale cress	plastid	53.31	54.51
PGSC0003DMT400004095	Potato	plastid	57.9	54.22
VIT_03s0038g00880.t01	Wine grape	plastid	57.9	54.12
Solyc01g110520.2.1	Tomato	nucleus, plastid	57.17	53.9
Bra011888.1-P	Field mustard	plastid	53.49	53.59
PGSC0003DMT400089372	Potato	plastid	54.04	53.07
Solyc01g088360.2.1	Tomato	plastid	53.68	52.99
CDY61829	Canola	cytosol, plastid	57.35	51.4
CDX75458	Canola	plastid	58.46	41.14
CDY45330	Canola	mitochondrion	11.4	36.69
Bra011557.1-P	Field mustard	plastid	10.85	27.44

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1	UniProt:A0A1D6N617
InterPro:GATase_2_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0005488	GO:GO:0006139
GO:GO:0006164	GO:GO:0006189	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009116	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0046872	GO:GO:0051536
InterPro:IPR017932	InterPro:IPR029055	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	ProteinID:ONM36041.1	PFAM:PF13537
PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278	PANTHER:PTHR11907	PANTHER:PTHR11907:SF14
InterPro:PurF	InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235	TIGRFAMs:TIGR01134	UniParc:UPI0002213087
EnsemblPlantsGene:Zm00001d042673	EnsemblPlants:Zm00001d042673_P001	EnsemblPlants:Zm00001d042673_T001	SEG:seg	:	:

Description

Amidophosphoribosyltransferase

Coordinates

chr3:+:176268537..176270171

Molecular Weight (calculated)

58748.0 Da

IEP (calculated)

7.351

GRAVY (calculated)

-0.060

Length

544 amino acids

Sequence
(BLAST)

001: MAATAAAAAT ASTPSSPLRR RASAAPTTRH NSQLKCSIKP SQFELRHRAA GLAPARALLP DRVTPFSFDA DGDDHPREEC GVFGVIGDPD ASSLCYLGLQ
101: KLQHRGEEGA GIVASDADGK LNSVTDLGLV GDVFRDPARL AKLPGNAAIG HVRYSTAGAS SRRNVQPFLA AYRFGQLAVA HNGNLVNYQA LRNKLEAQGS
201: IFNTSSDTEV ILHLISTSLS RPLLSRICDA CERLAGAYSL LFMTADKLFA VRDPFGFRPL VMGRRPNGAV VFSSETCALD LIDATYEREV EPGEVVVVDR
301: RDMSVSYACL VPHRPRKSCV FEHIYFALPN SVVFGHAVHE RRTAYGRALA EESPAPTADV VIPVPDSGFY AALGFAQASG LEFQQGLIRW HYSGRSFIQP
401: SQAIRDLAVK LKLAPVRGVI TGKSVVVVDD SLVRGTTSSK IVRLLRDAGA REVHMRISSP PVVGSCLYGI DTPSEGELIS NRMDLEGVRR TIGCDSLAFL
501: SLDKLHSIYG NEAHEFCDAC FSRNYPVLPT VPEPVPELVS AFED

Best Arabidopsis Sequence Match ( AT2G16570.1 )
(BLAST)

001: MAATTSFSSS LSLITKPNNS SYTNQPLPLF PKPFLKPPHL SLLPSPLSSP PPSLIHGVSS YFSSPSPSED NSHTPFDYHN DEDDEKPREE CGVVGIYGDP
101: EASRLCYLAL HALQHRGQEG AGIVTVSPEK VLQTITGVGL VSEVFNESKL DQLPGEFAIG HVRYSTAGAS MLKNVQPFVA GYRFGSIGVA HNGNLVNYKT
201: LRAMLEENGS IFNTSSDTEV VLHLIAISKA RPFFMRIIDA CEKLQGAYSM VFVTEDKLVA VRDPYGFRPL VMGRRSNGAV VFASETCALD LIEATYEREV
301: YPGEVLVVDK DGVKSQCLMP KFEPKQCIFE HIYFSLPNSI VFGRSVYESR HVFGEILATE SPVECDVVIA VPDSGVVAAL GYAAKSGVPF QQGLIRSHYV
401: GRTFIEPSQK IRDFGVKLKL SPVRGVLEGK RVVVVDDSIV RGTTSSKIVR LLREAGAKEV HMRIASPPIV ASCYYGVDTP SSEELISNRL SVEEINEFIG
501: SDSLAFLSFD TLKKHLGKDS KSFCYACFTG DYPVKPTEVK VKRGGGDFID DGLVGSFENI EAGWVR

Arabidopsis Description

ASE1Amidophosphoribosyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI61]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.