Factsheet for Solyc01g088360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34740.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089372	Potato	plastid	92.2	91.7
KRH24353	Soybean	cytosol, plastid	16.7	73.02
KRH39819	Soybean	plastid	64.61	69.67
CDY41949	Canola	cytosol	59.53	68.19
KRH24354	Soybean	nucleus, plastid	69.69	67.84
CDY42591	Canola	cytosol	59.35	67.56
Solyc01g110520.2.1	Tomato	nucleus, plastid	70.42	67.24
CDY46205	Canola	plastid	67.7	66.85
KRH39820	Soybean	nucleus, plastid	68.97	66.32
AT2G16570.1	Thale cress	plastid	67.88	66.08
AT4G34740.1	Thale cress	plastid	67.15	65.95
KRH60750	Soybean	extracellular, plastid	67.15	65.03
VIT_03s0038g00880.t01	Wine grape	plastid	68.06	64.43
AT4G38880.1	Thale cress	plastid	61.89	64.1
GSMUA_Achr3P22240_001	Banana	cytosol	50.64	62.28
CDY61829	Canola	cytosol, plastid	68.06	61.78
GSMUA_Achr4P16330_001	Banana	cytosol	52.09	58.45
EES18281	Sorghum	plastid	53.72	54.51
Os01t0873100-01	Rice	plasma membrane	10.34	54.29
Zm00001d010197_P001	Maize	plastid	53.18	54.26
Zm00001d038332_P001	Maize	plastid	53.36	54.14
TraesCS3B01G415900.1	Wheat	plastid	53.18	53.76
Zm00001d042673_P001	Maize	plastid	52.99	53.68
TraesCS3D01G376600.1	Wheat	plastid	53.36	53.65
Os05t0430800-01	Rice	plastid	52.45	53.42
GSMUA_AchrUn_...	Banana	plastid	51.72	53.17
TraesCS3A01G383500.1	Wheat	plastid	52.45	52.55
OQU87957	Sorghum	plastid	52.09	52.47
TraesCS1D01G269400.1	Wheat	plastid	51.54	52.11
TraesCS1B01G279800.1	Wheat	plastid	51.72	52.1
TraesCS1A01G269300.1	Wheat	plastid	51.36	51.74
HORVU1Hr1G074460.2	Barley	plastid	51.72	50.53
CDX75458	Canola	plastid	68.6	48.9
HORVU3Hr1G082280.1	Barley	plastid	52.81	47.32
Bra011557.1-P	Field mustard	plastid	9.07	23.26

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1	MEROPS:C44.001
InterPro:GATase_2_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0005488	GO:GO:0006139
GO:GO:0006164	GO:GO:0006189	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009116	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0046872	GO:GO:0051536
InterPro:IPR017932	InterPro:IPR029055	UniProt:K4AYM6	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	PFAM:PF00156
PFAM:PF13537	PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278	PANTHER:PTHR11907
PANTHER:PTHR11907:SF14	InterPro:PurF	InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc01g088360.2
EnsemblPlants:Solyc01g088360.2.1	TIGRFAMs:TIGR01134	UniParc:UPI000276176A	SEG:seg	:	:

Description

Amidophosphoribosyltransferase 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G38880) UniProtKB/Swiss-Prot;Acc:Q9T0J5]

Coordinates

chr1:-:83133428..83135140

Molecular Weight (calculated)

60423.7 Da

IEP (calculated)

7.512

GRAVY (calculated)

-0.092

Length

551 amino acids

Sequence
(BLAST)

001: MATNISASAS STTNLLSQRL LSFPPSQFYK NILTKPYQQQ CLLITSSNKK NRAAMVVNSS RKLINLDQHY LDDDKPKEEC GVVGIYGDPE ASRLCYLALH
101: ALQHRGQEGA GMVTVENKAI KSITGIGLVS DVFNELKLDQ LPGDMAIGHV RYSTAAGSSS MLKNVQPFVA SSKFGSFGVA HNGNFVNYQL LRAELEGKGS
201: IFSTTSDTEV VLHLMAKSKA RIFALRVLEA CEKLQGAYSM VFVTEDGKLV AVRDPFGFRP LVMGRRKNGA IVFASETCAL DMVEATYERE VHPGEMVLVD
301: DTSNEPQSMY LLKPHPPEPK SCIFEHIYFA QPNSIVFGKS VYESRHAFGE ILATESPVEG CDVVIAVPDS GVVAALGYAA KTGVPYQQGL IRSHYVGRTF
401: IEPSQKIRDF GVKLKLSPVR AVLEGKKVVV VDDSIVRGTT SSKIVRMLKE AGAKEVHMRI ASPPIIASCY YGIDTPCTEE LISNRMNVEE IRKFIGADSL
501: AFLPTDSFRK LLGSDHTNFC YACFSGKYPL YPSVDMEESI DDTRKSTVSA I

Best Arabidopsis Sequence Match ( AT2G16570.1 )
(BLAST)

001: MAATTSFSSS LSLITKPNNS SYTNQPLPLF PKPFLKPPHL SLLPSPLSSP PPSLIHGVSS YFSSPSPSED NSHTPFDYHN DEDDEKPREE CGVVGIYGDP
101: EASRLCYLAL HALQHRGQEG AGIVTVSPEK VLQTITGVGL VSEVFNESKL DQLPGEFAIG HVRYSTAGAS MLKNVQPFVA GYRFGSIGVA HNGNLVNYKT
201: LRAMLEENGS IFNTSSDTEV VLHLIAISKA RPFFMRIIDA CEKLQGAYSM VFVTEDKLVA VRDPYGFRPL VMGRRSNGAV VFASETCALD LIEATYEREV
301: YPGEVLVVDK DGVKSQCLMP KFEPKQCIFE HIYFSLPNSI VFGRSVYESR HVFGEILATE SPVECDVVIA VPDSGVVAAL GYAAKSGVPF QQGLIRSHYV
401: GRTFIEPSQK IRDFGVKLKL SPVRGVLEGK RVVVVDDSIV RGTTSSKIVR LLREAGAKEV HMRIASPPIV ASCYYGVDTP SSEELISNRL SVEEINEFIG
501: SDSLAFLSFD TLKKHLGKDS KSFCYACFTG DYPVKPTEVK VKRGGGDFID DGLVGSFENI EAGWVR

Arabidopsis Description

ASE1Amidophosphoribosyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI61]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.