Factsheet for TraesCS1B01G279800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34740.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT4G34740.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT4G34740.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT4G34740.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT4G34740.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G269400.1	Wheat	plastid	97.44	97.8
TraesCS1A01G269300.1	Wheat	plastid	94.33	94.33
HORVU1Hr1G074460.2	Barley	plastid	92.87	90.07
Os05t0430800-01	Rice	plastid	87.02	87.99
Zm00001d038332_P001	Maize	plastid	85.56	86.19
Zm00001d010197_P001	Maize	plastid	84.83	85.93
EES18281	Sorghum	plastid	85.19	85.82
TraesCS3B01G415900.1	Wheat	plastid	75.5	75.78
GSMUA_Achr3P22240_001	Banana	cytosol	57.4	70.09
GSMUA_Achr4P16330_001	Banana	cytosol	61.43	68.43
GSMUA_AchrUn_...	Banana	plastid	60.69	61.94
CDY41949	Canola	cytosol	51.01	58.0
CDY42591	Canola	cytosol	50.82	57.44
Bra011558.1-P	Field mustard	plastid	57.77	56.94
KRH39819	Soybean	plastid	52.83	56.56
Bra001980.1-P	Field mustard	plastid	57.4	56.37
KRH60750	Soybean	extracellular, plastid	58.5	56.24
CDY46205	Canola	plastid	57.04	55.91
AT2G16570.1	Thale cress	plastid	57.59	55.65
AT4G34740.1	Thale cress	plastid	56.86	55.44
KRH39820	Soybean	nucleus, plastid	57.4	54.8
KRH24354	Soybean	nucleus, plastid	56.49	54.59
AT4G38880.1	Thale cress	plastid	53.02	54.51
Solyc01g110520.2.1	Tomato	nucleus, plastid	57.4	54.42
PGSC0003DMT400004095	Potato	plastid	57.4	54.04
VIT_03s0038g00880.t01	Wine grape	plastid	57.22	53.78
KRH24353	Soybean	cytosol, plastid	12.25	53.17
PGSC0003DMT400089372	Potato	plastid	52.83	52.17
Bra011888.1-P	Field mustard	plastid	51.74	52.12
Solyc01g088360.2.1	Tomato	plastid	52.1	51.72
CDY61829	Canola	cytosol, plastid	56.67	51.07
CDX75458	Canola	plastid	57.4	40.62
CDY45330	Canola	mitochondrion	12.07	39.05
Bra011557.1-P	Field mustard	plastid	11.15	28.37

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1	InterPro:GATase_2_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009113	GO:GO:0009116	GO:GO:0009987	GO:GO:0016740	InterPro:IPR017932
InterPro:IPR029055	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	PFAM:PF00156	PFAM:PF13537	PIRSF:PIRSF000485
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278	PANTHER:PTHR11907	PANTHER:PTHR11907:SF14	InterPro:PurF
InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235	TIGRFAMs:TIGR01134	EnsemblPlantsGene:TraesCS1B01G279800	EnsemblPlants:TraesCS1B01G279800.1
TIGR:cd00715	TIGR:cd06223	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:488393468..488395111

Molecular Weight (calculated)

58999.3 Da

IEP (calculated)

6.976

GRAVY (calculated)

-0.108

Length

547 amino acids

Sequence
(BLAST)

001: MGMAAATTTA PSTSRLLYHH HTTSGSKRHT HHHQQRLRYA PNPSPLALRR RLSPPAGAAL LPDRVTPFSY GADDESDDHP REECGLVGVV GHPDASSLCY
101: LGLQKLQHRG EEGAGIVAAG GDGKLKSVTG LGLVADVFGD PSRLASLPGP AAIGHVRYST AGAAASLRNV QPFLAGYRFG QVAVAHNGNL VNYQALRSKL
201: EARGSIFNTT SDTEVILHLI STSLSRPLLA RICDACERLA GAYSLLFLTA DKLFAVRDPH GFRPLVLGRL PNGAVAFASE TCALDLIDAT YEREVEPGEV
301: VMVDRRDMSV SSACLVPHLP RRACVFEHIY FSLPNSVVFS HDVHERRTAF GRALAEESPA PGADVVIPVP DSGFYAALGF SRESGLEFQQ GLIRWHYSGR
401: SFIQPTQAIR DLAVKLKLAP VRGVIRGKSV VVVDDSLVRG TTSSKIVRLL RDAGAREVHM RIASPPVVGS CLYGIDTPSD GELISNRMDL EGVRREIGSD
501: SLAFLSLDKL HGIYGEEAGD YCDACFSRKY PVLPTLPEPA AEFDEEE

Best Arabidopsis Sequence Match ( AT2G16570.1 )
(BLAST)

001: MAATTSFSSS LSLITKPNNS SYTNQPLPLF PKPFLKPPHL SLLPSPLSSP PPSLIHGVSS YFSSPSPSED NSHTPFDYHN DEDDEKPREE CGVVGIYGDP
101: EASRLCYLAL HALQHRGQEG AGIVTVSPEK VLQTITGVGL VSEVFNESKL DQLPGEFAIG HVRYSTAGAS MLKNVQPFVA GYRFGSIGVA HNGNLVNYKT
201: LRAMLEENGS IFNTSSDTEV VLHLIAISKA RPFFMRIIDA CEKLQGAYSM VFVTEDKLVA VRDPYGFRPL VMGRRSNGAV VFASETCALD LIEATYEREV
301: YPGEVLVVDK DGVKSQCLMP KFEPKQCIFE HIYFSLPNSI VFGRSVYESR HVFGEILATE SPVECDVVIA VPDSGVVAAL GYAAKSGVPF QQGLIRSHYV
401: GRTFIEPSQK IRDFGVKLKL SPVRGVLEGK RVVVVDDSIV RGTTSSKIVR LLREAGAKEV HMRIASPPIV ASCYYGVDTP SSEELISNRL SVEEINEFIG
501: SDSLAFLSFD TLKKHLGKDS KSFCYACFTG DYPVKPTEVK VKRGGGDFID DGLVGSFENI EAGWVR

Arabidopsis Description

ASE1Amidophosphoribosyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI61]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.