Factsheet for Solyc01g110520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34740.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004095	Potato	plastid	97.23	96.56
KRH24354	Soybean	nucleus, plastid	76.26	77.74
KRH24353	Soybean	cytosol, plastid	16.81	76.98
KRH39820	Soybean	nucleus, plastid	75.22	75.74
CDY46205	Canola	plastid	72.79	75.27
AT4G34740.1	Thale cress	plastid	72.79	74.87
KRH39819	Soybean	plastid	65.68	74.17
AT2G16570.1	Thale cress	plastid	72.62	74.03
VIT_03s0038g00880.t01	Wine grape	plastid	74.52	73.88
CDY42591	Canola	cytosol	60.49	72.11
CDY41949	Canola	cytosol	59.97	71.93
KRH60750	Soybean	extracellular, plastid	70.88	71.88
Solyc01g088360.2.1	Tomato	plastid	67.24	70.42
CDY61829	Canola	cytosol, plastid	73.66	70.02
AT4G38880.1	Thale cress	plastid	61.53	66.73
GSMUA_Achr3P22240_001	Banana	cytosol	51.3	66.07
GSMUA_Achr4P16330_001	Banana	cytosol	54.42	63.95
EES18281	Sorghum	plastid	55.11	58.56
Zm00001d010197_P001	Maize	plastid	54.77	58.52
Zm00001d038332_P001	Maize	plastid	54.94	58.38
Os05t0430800-01	Rice	plastid	54.59	58.23
GSMUA_AchrUn_...	Banana	plastid	54.07	58.21
TraesCS3D01G376600.1	Wheat	plastid	55.11	58.03
TraesCS1B01G279800.1	Wheat	plastid	54.42	57.4
TraesCS3A01G383500.1	Wheat	plastid	54.59	57.27
Zm00001d042673_P001	Maize	plastid	53.9	57.17
TraesCS3B01G415900.1	Wheat	plastid	53.73	56.88
OQU87957	Sorghum	plastid	53.9	56.86
TraesCS1D01G269400.1	Wheat	plastid	53.38	56.51
TraesCS1A01G269300.1	Wheat	plastid	52.86	55.76
Os01t0873100-01	Rice	plasma membrane	10.05	55.24
CDX75458	Canola	plastid	73.83	55.11
HORVU1Hr1G074460.2	Barley	plastid	53.38	54.61
HORVU3Hr1G082280.1	Barley	plastid	53.9	50.57
Bra011557.1-P	Field mustard	plastid	9.53	25.58

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1	MEROPS:C44.001
InterPro:GATase_2_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0005488	GO:GO:0006139
GO:GO:0006164	GO:GO:0006189	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009116	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0046872	GO:GO:0051536
InterPro:IPR017932	InterPro:IPR029055	UniProt:K4B3R5	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	PFAM:PF00156
PFAM:PF13537	PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278	PANTHER:PTHR11907
PANTHER:PTHR11907:SF14	InterPro:PurF	InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc01g110520.2
EnsemblPlants:Solyc01g110520.2.1	TIGRFAMs:TIGR01134	UniParc:UPI0002768FB2	:	:	:

Description

Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:K4B3R5]

Coordinates

chr1:-:97193931..97195979

Molecular Weight (calculated)

62642.0 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.048

Length

577 amino acids

Sequence
(BLAST)

001: MAAAVSTAVT NKSHLSSALD KPFTTPSQKL LSLAVKTLPK PYHHHHRTLI TAASKNPLTD VVSSKPIPDG RSFDSYFHDD DDKPREECGV VGIYGDSEAS
101: RLCYLALHAL QHRGQEGAGI VCVNDNVLKS ITGVGLVSDV FSESKLDQLP GDLAIGHVRY STAGSSMLKN VQPFVASYRF GSVGVAHNGN LVNYKQLRGE
201: LEENGSIFNT SSDTEVVLHL IAISKARPFL LRIVEACEKI EGAYSMVFAT EDKLVAVRDP YGFRPLVMGR RSNGAVVFAS ETCALDLIEA TYEREVLPGE
301: VVVVDKEGVQ SICLMPHPEP KSCIFEHIYF ALPNSVVFGR SVYESRRAFG EILATEAPVE CDVVIAVPDS GVVAALGYAA KAGVPFQQGL IRSHYVGRTF
401: IEPSQKIRDF GVKLKLSPVR AVLEGKRVVV VDDSIVRGTT SSKIVRLLKE AGAKEVHMRI ASPPIIASCY YGVDTPSSEE LISNRMSVEE IREYIGSDSL
501: AFLPIESLNK LLGSDSKSYC YACFSGNYPV EPTGKVKRIG DFMDDGLSGD MDSIDGGWLP GSSKVQKKII LNEVRTS

Best Arabidopsis Sequence Match ( AT4G34740.1 )
(BLAST)

001: MAATSSISSS LSLNAKPNKL SNNNNNNKPH RFLRNPFLNP SSSSFSPLPA SISSSSSSPS FPLRVSNPLT LLAADNDDYD EKPREECGVV GIYGDSEASR
101: LCYLALHALQ HRGQEGAGIV TVSKDKVLQT ITGVGLVSEV FSESKLDQLP GDIAIGHVRY STAGSSMLKN VQPFVAGYRF GSVGVAHNGN LVNYTKLRAD
201: LEENGSIFNT SSDTEVVLHL IAISKARPFF MRIVDACEKL QGAYSMVFVT EDKLVAVRDP HGFRPLVMGR RSNGAVVFAS ETCALDLIEA TYEREVYPGE
301: VLVVDKDGVK CQCLMPHPEP KQCIFEHIYF SLPNSIVFGR SVYESRHVFG EILATESPVD CDVVIAVPDS GVVAALGYAA KAGVAFQQGL IRSHYVGRTF
401: IEPSQKIRDF GVKLKLSPVR GVLEGKRVVV VDDSIVRGTT SSKIVRLLRE AGAKEVHMRI ASPPIIASCY YGVDTPSSNE LISNRMSVDE IRDYIGCDSL
501: AFLSFETLKK HLGEDSRSFC YACFTGDYPV KPTEDKVKRG GDFIDDGLVG GIHNIEGGWV R

Arabidopsis Description

ASE2Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UYQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.