CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39820	Soybean	nucleus, plastid	91.17	90.05
KRH24353	Soybean	cytosol, plastid	17.84	80.16
KRH39819	Soybean	plastid	72.08	79.84
Solyc01g110520.2.1	Tomato	nucleus, plastid	77.74	76.26
VIT_03s0038g00880.t01	Wine grape	plastid	78.27	76.12
PGSC0003DMT400004095	Potato	plastid	77.56	75.56
KRH60750	Soybean	extracellular, plastid	75.09	74.69
CDY41949	Canola	cytosol	60.95	71.73
CDY42591	Canola	cytosol	60.95	71.28
Solyc01g088360.2.1	Tomato	plastid	67.84	69.69
PGSC0003DMT400089372	Potato	plastid	67.31	68.77
GSMUA_Achr3P22240_001	Banana	cytosol	52.47	66.29
AT4G38880.1	Thale cress	plastid	61.84	65.79
GSMUA_Achr4P16330_001	Banana	cytosol	56.54	65.17
Bra011888.1-P	Field mustard	plastid	61.84	64.46
GSMUA_AchrUn_...	Banana	plastid	56.36	59.51
EES18281	Sorghum	plastid	56.36	58.75
Zm00001d038332_P001	Maize	plastid	56.18	58.56
Zm00001d010197_P001	Maize	plastid	55.48	58.15
Os01t0873100-01	Rice	plasma membrane	10.78	58.1
Os05t0430800-01	Rice	plastid	55.12	57.67
TraesCS3B01G415900.1	Wheat	plastid	55.12	57.25
TraesCS3D01G376600.1	Wheat	plastid	55.3	57.12
Zm00001d042673_P001	Maize	plastid	54.59	56.8
TraesCS1A01G269300.1	Wheat	plastid	54.77	56.67
OQU87957	Sorghum	plastid	54.77	56.67
TraesCS3A01G383500.1	Wheat	plastid	54.95	56.55
TraesCS1D01G269400.1	Wheat	plastid	54.42	56.51
TraesCS1B01G279800.1	Wheat	plastid	54.59	56.49
HORVU1Hr1G074460.2	Barley	plastid	54.59	54.79
HORVU3Hr1G082280.1	Barley	plastid	54.42	50.08

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	EntrezGene:100801720	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1
EMBL:ACUP02007174	MEROPS:C44.001	InterPro:GATase_2_dom	EnsemblPlantsGene:GLYMA_12G036200	GO:GO:0003674	GO:GO:0003824
GO:GO:0004044	GO:GO:0005488	GO:GO:0006139	GO:GO:0006164	GO:GO:0006189	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009113	GO:GO:0009116	GO:GO:0009987	GO:GO:0016740
GO:GO:0016757	GO:GO:0046872	GO:GO:0051536	UniProt:I1LPW4	InterPro:IPR017932	InterPro:IPR029055
EnsemblPlants:KRH24354	ProteinID:KRH24354	ProteinID:KRH24354.1	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	PFAM:PF00156
PFAM:PF13537	PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278	PANTHER:PTHR11907
PANTHER:PTHR11907:SF14	MetaCyc:PWY-6121	MetaCyc:PWY-6122	MetaCyc:PWY-6277	MetaCyc:PWY-7282	InterPro:PurF
InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235	TIGRFAMs:TIGR01134	UniParc:UPI000233CD51	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:2642339..2644644

Molecular Weight (calculated)

61347.3 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.024

Length

566 amino acids

Sequence
(BLAST)

001: MAAAAAATTL SSSLSKPSSL TFQTHSFPIT LPTPPRAAAK PPLLVFSKNP ISDIVSSTFS RAEEGAWDDE KPREECGVVG IYGDPEASRL CYLALHALQH
101: RGQEGAGIVT VNNNVLQSIT GVGLVSEVFN QSKLDQLPGS LSIGHVRYST AGQSMLKNVQ PFVAGYRFGS VGVAHNGNLV NYKTLRTNLE DNGSIFNTTS
201: DTEVVLHLIA TSKHRPFILR IVDACEKLEG AYSIVFVTED KLVAVRDPFG FRPLVMGRRS NGAVVFASET CALDLIEATY EREVYPGEVL VVDKNGIQSL
301: CLMSHPQPKQ CIFEHIYFAL PNSVVFGRSV YESRRQFGEI LATESPVECD VVIAVPDSGV VAALGYAAKA GVPFQQGLIR SHYVGRTFIE PSQKIRDFGV
401: KLKLSPVRAV LEGKRVVVVD DSIVRGTTSS KIVRLLKEAG AKEVHMRIAS PPIIGSCYYG VDTPSSEELI SNRMSVEEIR DFIGSDSLAF LPFDSLKRLL
501: GSESPNFCYA CFSGNYPVEP RELKVKRVGD FVDDGLNGSL ESIDGGWVQA NRNQIKVGTG TSTSIS

Best Arabidopsis Sequence Match ( AT2G16570.1 )
(BLAST)

001: MAATTSFSSS LSLITKPNNS SYTNQPLPLF PKPFLKPPHL SLLPSPLSSP PPSLIHGVSS YFSSPSPSED NSHTPFDYHN DEDDEKPREE CGVVGIYGDP
101: EASRLCYLAL HALQHRGQEG AGIVTVSPEK VLQTITGVGL VSEVFNESKL DQLPGEFAIG HVRYSTAGAS MLKNVQPFVA GYRFGSIGVA HNGNLVNYKT
201: LRAMLEENGS IFNTSSDTEV VLHLIAISKA RPFFMRIIDA CEKLQGAYSM VFVTEDKLVA VRDPYGFRPL VMGRRSNGAV VFASETCALD LIEATYEREV
301: YPGEVLVVDK DGVKSQCLMP KFEPKQCIFE HIYFSLPNSI VFGRSVYESR HVFGEILATE SPVECDVVIA VPDSGVVAAL GYAAKSGVPF QQGLIRSHYV
401: GRTFIEPSQK IRDFGVKLKL SPVRGVLEGK RVVVVDDSIV RGTTSSKIVR LLREAGAKEV HMRIASPPIV ASCYYGVDTP SSEELISNRL SVEEINEFIG
501: SDSLAFLSFD TLKKHLGKDS KSFCYACFTG DYPVKPTEVK VKRGGGDFID DGLVGSFENI EAGWVR

Arabidopsis Description

ASE1Amidophosphoribosyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI61]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.