Factsheet for PGSC0003DMT400089372

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34740.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088360.2.1	Tomato	plastid	91.7	92.2
KRH24353	Soybean	cytosol, plastid	16.61	73.02
KRH39819	Soybean	plastid	63.72	69.08
CDY41949	Canola	cytosol	59.21	68.19
CDY42591	Canola	cytosol	58.84	67.36
KRH24354	Soybean	nucleus, plastid	68.77	67.31
PGSC0003DMT400004095	Potato	plastid	70.04	66.78
CDY46205	Canola	plastid	66.43	65.95
KRH39820	Soybean	nucleus, plastid	68.05	65.79
AT4G34740.1	Thale cress	plastid	66.43	65.6
AT2G16570.1	Thale cress	plastid	66.79	65.37
KRH60750	Soybean	extracellular, plastid	66.79	65.03
AT4G38880.1	Thale cress	plastid	61.91	64.47
VIT_03s0038g00880.t01	Wine grape	plastid	67.33	64.09
GSMUA_Achr3P22240_001	Banana	cytosol	50.72	62.72
CDY61829	Canola	cytosol, plastid	66.79	60.96
GSMUA_Achr4P16330_001	Banana	cytosol	52.53	59.27
EES18281	Sorghum	plastid	53.97	55.06
Zm00001d010197_P001	Maize	plastid	53.43	54.81
Zm00001d038332_P001	Maize	plastid	53.61	54.7
Zm00001d042673_P001	Maize	plastid	53.07	54.04
TraesCS3D01G376600.1	Wheat	plastid	53.43	54.01
TraesCS3B01G415900.1	Wheat	plastid	53.07	53.95
GSMUA_AchrUn_...	Banana	plastid	52.17	53.92
Os05t0430800-01	Rice	plastid	52.53	53.79
Os01t0873100-01	Rice	plasma membrane	10.11	53.33
TraesCS3A01G383500.1	Wheat	plastid	52.71	53.09
TraesCS1D01G269400.1	Wheat	plastid	51.99	52.84
TraesCS1B01G279800.1	Wheat	plastid	52.17	52.83
OQU87957	Sorghum	plastid	51.99	52.65
TraesCS1A01G269300.1	Wheat	plastid	51.81	52.47
HORVU1Hr1G074460.2	Barley	plastid	52.17	51.24
CDX75458	Canola	plastid	67.33	48.25
HORVU3Hr1G082280.1	Barley	plastid	52.71	47.48
Bra011557.1-P	Field mustard	plastid	9.57	24.65

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1	InterPro:GATase_2_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0005488	GO:GO:0006139	GO:GO:0006164
GO:GO:0006189	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113	GO:GO:0009116
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0046872	GO:GO:0051536	InterPro:IPR017932
InterPro:IPR029055	UniProt:M1DI12	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	PFAM:PF00156	PFAM:PF13537
EnsemblPlantsGene:PGSC0003DMG400038943	PGSC:PGSC0003DMG400038943	EnsemblPlants:PGSC0003DMT400089372	PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom
PFscan:PS51278	PANTHER:PTHR11907	PANTHER:PTHR11907:SF14	InterPro:PurF	InterPro:PurF_N	SUPFAM:SSF53271
SUPFAM:SSF56235	TIGRFAMs:TIGR01134	UniParc:UPI000296078E	SEG:seg	:	:

Description

Amidophosphoribosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400038943]

Coordinates

chr1:-:68063361..68065025

Molecular Weight (calculated)

60552.8 Da

IEP (calculated)

7.532

GRAVY (calculated)

-0.095

Length

554 amino acids

Sequence
(BLAST)

001: MATNISASAS STTNLLNQRL LSFPPSQYNK NILTKPYQQQ CLLISSSNKK NRAAMVVNSS RKLINLDQHD DYLDVDDKPK EECGVVGIYG DPEASRLCYL
101: ALHALQHRGQ EGAGMVTIEN KVVKSVTGIG LVSDVFNESK LDQLPGDMAI GHVRYSTAAG SSSMLKNVQP FVTSSKFGSF GVAHNGNFVN YQLLRAELEG
201: KGSIFSTTSD TEVVLHLIAK SKARIFALRV LEACEKLQGA YSMVFATEDG KLVAVRDPFG FRPLVMGRRK NGAIVFASET CALDLVEATY EREVHPGEMV
301: LVDETSKEPQ SMYLLKPHPP GPKSCIFEHI YFAQPNSIVF GKSVYESRHA FGEILATESP VEGCDVVIAV PDSGVVAALG YAAKAGVPYQ QGLIRSHYVG
401: RTFIEPSQKI RDFGVKLKLS PVRAILEGKK VVVVDDSIVR GTTSSKIVRM LKEAGAKEVH MRIASPPIIA SCYYGIDTPS TEELISNRMK VEEIRKFIGA
501: DSLAFLPTDS FRNLLGSDHT NFCYACFSGK YPLYPSVAME ESIDDTMKLT VAAN

Best Arabidopsis Sequence Match ( AT4G34740.1 )
(BLAST)

001: MAATSSISSS LSLNAKPNKL SNNNNNNKPH RFLRNPFLNP SSSSFSPLPA SISSSSSSPS FPLRVSNPLT LLAADNDDYD EKPREECGVV GIYGDSEASR
101: LCYLALHALQ HRGQEGAGIV TVSKDKVLQT ITGVGLVSEV FSESKLDQLP GDIAIGHVRY STAGSSMLKN VQPFVAGYRF GSVGVAHNGN LVNYTKLRAD
201: LEENGSIFNT SSDTEVVLHL IAISKARPFF MRIVDACEKL QGAYSMVFVT EDKLVAVRDP HGFRPLVMGR RSNGAVVFAS ETCALDLIEA TYEREVYPGE
301: VLVVDKDGVK CQCLMPHPEP KQCIFEHIYF SLPNSIVFGR SVYESRHVFG EILATESPVD CDVVIAVPDS GVVAALGYAA KAGVAFQQGL IRSHYVGRTF
401: IEPSQKIRDF GVKLKLSPVR GVLEGKRVVV VDDSIVRGTT SSKIVRLLRE AGAKEVHMRI ASPPIIASCY YGVDTPSSNE LISNRMSVDE IRDYIGCDSL
501: AFLSFETLKK HLGEDSRSFC YACFTGDYPV KPTEDKVKRG GDFIDDGLVG GIHNIEGGWV R

Arabidopsis Description

ASE2Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UYQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.