CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24353	Soybean	cytosol, plastid	16.87	76.19
KRH24354	Soybean	nucleus, plastid	74.69	75.09
KRH39820	Soybean	nucleus, plastid	75.04	74.52
KRH39819	Soybean	plastid	65.03	72.41
VIT_03s0038g00880.t01	Wine grape	plastid	72.94	71.31
CDY41949	Canola	cytosol	59.93	70.89
Solyc01g110520.2.1	Tomato	nucleus, plastid	71.88	70.88
PGSC0003DMT400004095	Potato	plastid	71.7	70.22
CDY42591	Canola	cytosol	59.58	70.04
Solyc01g088360.2.1	Tomato	plastid	65.03	67.15
PGSC0003DMT400089372	Potato	plastid	65.03	66.79
AT4G38880.1	Thale cress	plastid	61.86	66.17
GSMUA_Achr3P22240_001	Banana	cytosol	50.97	64.73
Bra011888.1-P	Field mustard	plastid	61.69	64.64
GSMUA_Achr4P16330_001	Banana	cytosol	54.83	63.54
Zm00001d038332_P001	Maize	plastid	57.29	60.04
EES18281	Sorghum	plastid	57.29	60.04
Zm00001d042673_P001	Maize	plastid	57.29	59.93
GSMUA_AchrUn_...	Banana	plastid	56.24	59.7
Os05t0430800-01	Rice	plastid	56.59	59.52
TraesCS3D01G376600.1	Wheat	plastid	56.94	59.12
Zm00001d010197_P001	Maize	plastid	56.06	59.07
TraesCS1D01G269400.1	Wheat	plastid	56.41	58.9
TraesCS3B01G415900.1	Wheat	plastid	56.41	58.9
TraesCS3A01G383500.1	Wheat	plastid	56.77	58.73
OQU87957	Sorghum	plastid	56.24	58.5
TraesCS1A01G269300.1	Wheat	plastid	56.24	58.5
TraesCS1B01G279800.1	Wheat	plastid	56.24	58.5
Os01t0873100-01	Rice	plasma membrane	10.54	57.14
HORVU1Hr1G074460.2	Barley	plastid	55.89	56.38
HORVU3Hr1G082280.1	Barley	plastid	56.59	52.36

Protein Annotations

KEGG:00230+2.4.2.14	KEGG:00250+2.4.2.14	Gene3D:3.40.50.2020	Gene3D:3.60.20.10	MapMan:6.1.1.1	EMBL:ACUP02002139
InterPro:GATase_2_dom	EnsemblPlantsGene:GLYMA_04G007300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004044	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006164
GO:GO:0006189	GO:GO:0006541	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009116	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	UniProt:I1JSI1	InterPro:IPR017932	InterPro:IPR029055
EnsemblPlants:KRH60750	ProteinID:KRH60750	ProteinID:KRH60750.1	HAMAP:MF_01931	InterPro:Ntn_hydrolases_N	PFAM:PF00156
PFAM:PF13537	PIRSF:PIRSF000485	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PFscan:PS51278	PANTHER:PTHR11907
PANTHER:PTHR11907:SF14	MetaCyc:PWY-6121	MetaCyc:PWY-6122	MetaCyc:PWY-6277	MetaCyc:PWY-7282	InterPro:PurF
InterPro:PurF_N	SUPFAM:SSF53271	SUPFAM:SSF56235	TIGRFAMs:TIGR01134	UniParc:UPI00023C17F2	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:564065..566082

Molecular Weight (calculated)

62197.0 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.092

Length

569 amino acids

Sequence
(BLAST)

001: MAAASNLSTL SSSSLSKPSS SFPFRNTPTN NNASFLHNKS LPNQNSLSHK LSSPLPLACN PKNQNTCVFF DDEDQKPREE CGVVGIYGDP EASRLCSLAL
101: HALQHRGQEG AGIVAVHDNH LQSVTGVGLV SDVFDESKLS RLPGTSAIGH VRYSTAGQSM LKNVQPFLAD YRFGSVAVAH NGNFVNYRSL RARLEHNNGS
201: IFNTTSDTEV VLHLIATSKH RPFLLRIVDA CEHLQGAYSL VFVTEDKLVA VRDPFGFRPL VMGRRTNGAV VLASETCALD LIEATYEREV YPGEVIVVDH
301: TGIQSLCLVS HPEPKQCIFE HIYFALPNSV VFGRSVYESR KKFGEILASE SPVECDVVIA VPDSGVVAAL GYAAKAGVPF QQGLIRSHYV GRTFIEPSQK
401: IRDFGVKLKL SPVHAVLEGK RVVVVDDSIV RGTTSSKIVR LLKEAGAKEV HMRIACPPIV ASCYYGVDTP SSEELISNRM SVEEIRKFIG SDSLAFLPLD
501: KLKTLLGDDA LNYCYACFSG KYPVEPEELQ MKRLGVAHFN WDDDFNGNFE SIDVGGWVTN QDGFKIGSV

Best Arabidopsis Sequence Match ( AT2G16570.1 )
(BLAST)

001: MAATTSFSSS LSLITKPNNS SYTNQPLPLF PKPFLKPPHL SLLPSPLSSP PPSLIHGVSS YFSSPSPSED NSHTPFDYHN DEDDEKPREE CGVVGIYGDP
101: EASRLCYLAL HALQHRGQEG AGIVTVSPEK VLQTITGVGL VSEVFNESKL DQLPGEFAIG HVRYSTAGAS MLKNVQPFVA GYRFGSIGVA HNGNLVNYKT
201: LRAMLEENGS IFNTSSDTEV VLHLIAISKA RPFFMRIIDA CEKLQGAYSM VFVTEDKLVA VRDPYGFRPL VMGRRSNGAV VFASETCALD LIEATYEREV
301: YPGEVLVVDK DGVKSQCLMP KFEPKQCIFE HIYFSLPNSI VFGRSVYESR HVFGEILATE SPVECDVVIA VPDSGVVAAL GYAAKSGVPF QQGLIRSHYV
401: GRTFIEPSQK IRDFGVKLKL SPVRGVLEGK RVVVVDDSIV RGTTSSKIVR LLREAGAKEV HMRIASPPIV ASCYYGVDTP SSEELISNRL SVEEINEFIG
501: SDSLAFLSFD TLKKHLGKDS KSFCYACFTG DYPVKPTEVK VKRGGGDFID DGLVGSFENI EAGWVR

Arabidopsis Description

ASE1Amidophosphoribosyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI61]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.