Factsheet for VIT_18s0001g09210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00730.t01	Wine grape	nucleus	52.16	38.0
VIT_08s0058g00110.t01	Wine grape	plastid	17.25	27.33
VIT_04s0044g01040.t01	Wine grape	nucleus	19.22	21.97
VIT_18s0001g10400.t01	Wine grape	nucleus	20.39	20.97
VIT_07s0031g00550.t01	Wine grape	nucleus	19.22	19.44
VIT_14s0006g01470.t01	Wine grape	nucleus	22.75	16.71
VIT_09s0002g02700.t01	Wine grape	nucleus	23.14	12.53

Protein Annotations

EntrezGene:100264335	wikigene:100264335	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AM444562	ProteinID:CAN71946
ProteinID:CAN71946.1	ProteinID:CCB45759	ProteinID:CCB45759.1	UniProt:F6GZM7	EMBL:FN595227	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100264335	wikigene:LOC100264335
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000210A051	ArrayExpress:VIT_18s0001g09210	EnsemblPlantsGene:VIT_18s0001g09210	EnsemblPlants:VIT_18s0001g09210.t01	RefSeq:XP_002283302	RefSeq:XP_002283302.1
RefSeq:XP_002283302.2	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:7711468..7712617

Molecular Weight (calculated)

27868.6 Da

IEP (calculated)

5.942

GRAVY (calculated)

-0.763

Length

255 amino acids

Sequence
(BLAST)

001: MDICMADEKD TSSFVPVFPD SASEETVLVG ENISNGKLGN LDDGQIAGIA VPENELQLKR KSDVPERLRG GEEKINSDLS ETAKKKPRVS RDVCGSKKNV
101: KSRRGLKPTP NGNNEEDTNA VSEGQSSSSI SSEDDSNASQ ELNGGTTSES KGSAALNSNG KTRASRGSAT DPQSLYARKR RERINERLRI LQNLVPNGTK
201: VDISTMLEEA VHYVKFLQLQ IKLLSSDDMW MYAPIAYNGM DIGLQNLHQK IPSLR

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.