Factsheet for Bra027435.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024309.1-P
Bra029188.1-P
Bra031913.1-P
Bra037781.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	Bra029188.1-P	AT5G51110.1	21798944
AT3G13440.1	Bra024309.1-P	AT5G64560.1	21798944
AT3G13440.1	Bra031913.1-P	AT5G64560.1	21798944
AT3G13440.1	Bra037781.1-P	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039401.1-P	Field mustard	cytosol	43.37	84.38
AT3G13440.1	Thale cress	cytosol	78.71	70.5
Bra039402.1-P	Field mustard	endoplasmic reticulum, extracellular	85.54	68.71
PGSC0003DMT400061225	Potato	cytosol	60.64	64.81
KRH65321	Soybean	cytosol	64.66	62.65
Solyc12g100070.1.1	Tomato	cytosol	47.79	60.71
CDY43990	Canola	nucleus	98.39	54.44
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	59.04	54.04
EER93176	Sorghum	cytosol	53.41	47.5
Zm00001d012932_P001	Maize	extracellular	53.01	47.48
HORVU5Hr1G114620.1	Barley	cytosol	53.01	45.99
TraesCS5A01G486400.1	Wheat	cytosol	53.01	45.99
TraesCS5D01G500400.1	Wheat	cytosol	53.01	45.99
Os03t0824200-01	Rice	cytosol	52.61	45.96
TraesCS5B01G500200.1	Wheat	plastid	53.01	44.9
Zm00001d011137_P001	Maize	plastid	23.29	35.58
Zm00001d051490_P001	Maize	cytosol	28.11	30.17
Zm00001d042153_P001	Maize	mitochondrion	44.18	18.58

Protein Annotations

EnsemblPlants:Bra027435.1	EnsemblPlants:Bra027435.1-P	EnsemblPlantsGene:Bra027435	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:SAM-dependent_MTases
InterPro:Small_mtfrase_dom	PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	PFAM:PF05175	SEG:seg	SUPFAM:SSF53335
UniParc:UPI000254807E	UniProt:M4EF73	MapMan:35.2	:	:	:

Description

AT3G13440 (E=1e-107) | methyltransferase/ nucleic acid binding

Coordinates

chrA05:-:20903963..20904712

Molecular Weight (calculated)

27841.5 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.068

Length

249 amino acids

Sequence
(BLAST)

001: MSEKPPRIAD IMRVSSHREV YEPCDDSFAL VDALLADQTN LINHNPNLCM EIGCGSGYVI TSLILLLKPK LPNVHYLATD TNPIAARVTN QTLEAHGVKA
101: EIVCTDIASC LEERPAGLVD VMVVSPPYVP TPEYEVGMEG IASAWAGGEN GRSVIDRMLP VVDRLLSEKG WFYLVTLSSN YPAEICLMMR KRGFAWRILV
201: QRSTEEENLV ILKFWRDGDE VSLEKETSTA SLVSEFSRSL SSFMEKQWR

Best Arabidopsis Sequence Match ( AT3G13440.1 )
(BLAST)

001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.