Factsheet for PGSC0003DMT400061225

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013443

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	PGSC0003DMT400013443	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100070.1.1	Tomato	cytosol	80.69	95.92
KRH65321	Soybean	cytosol	76.39	69.26
CDY23600	Canola	cytosol	65.67	61.45
Bra027435.1-P	Field mustard	cytosol	64.81	60.64
Bra039401.1-P	Field mustard	cytosol	32.62	59.38
AT3G13440.1	Thale cress	cytosol	69.1	57.91
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	67.38	57.72
CDY24184	Canola	plastid	68.24	51.62
Bra039402.1-P	Field mustard	endoplasmic reticulum, extracellular	68.67	51.61
Zm00001d012932_P001	Maize	extracellular	60.09	50.36
CDY07090	Canola	plasma membrane	67.81	50.32
EER93176	Sorghum	cytosol	59.66	49.64
Os03t0824200-01	Rice	cytosol	60.09	49.12
HORVU5Hr1G114620.1	Barley	cytosol	59.66	48.43
TraesCS5D01G500400.1	Wheat	cytosol	59.66	48.43
TraesCS5A01G486400.1	Wheat	cytosol	59.66	48.43
TraesCS5B01G500200.1	Wheat	plastid	59.66	47.28
Zm00001d011137_P001	Maize	plastid	26.18	37.42
CDY43990	Canola	nucleus	66.09	34.22
Zm00001d051490_P001	Maize	cytosol	32.62	32.76
Zm00001d042153_P001	Maize	mitochondrion	50.64	19.93

Protein Annotations

EntrezGene:102605507	Gene3D:3.40.50.150	MapMan:35.2	InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0008276	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0032259
UniProt:M1C790	PFAM:PF05175	EnsemblPlantsGene:PGSC0003DMG400023836	PGSC:PGSC0003DMG400023836	EnsemblPlants:PGSC0003DMT400061225	ScanProsite:PS00092
PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	InterPro:PrmC-related	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Small_mtfrase_dom
TIGRFAMs:TIGR00537	UniParc:UPI000294D44E	RefSeq:XP_006365817.1	:	:	:

Description

SAM (And some other nucleotide) binding motif; Methyltransferase small [Source:PGSC_GENE;Acc:PGSC0003DMG400023836]

Coordinates

chr12:-:60716780..60719038

Molecular Weight (calculated)

25767.9 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.072

Length

233 amino acids

Sequence
(BLAST)

001: MLSRIAKIPL VSSHPEVYEP CDDSFALVDA LLADRTNLLQ HKPSICMEIG CGSGYVITSL AVMLGHEGFV PYYIATDINP HAIRVTRETM DAHGVYAELV
101: NTDITSGLEK RLAGSVDVLV VNPPYVPTPE DEVGFEGITS AWAGGENGRS VIDKILPAAD NLLSEKGWLY MVTLTANKPS EICLEMRKKG YASRIILQRS
201: TEEESLHIIK FWRDSDSQLE LNNLNYWSKL VGN

Best Arabidopsis Sequence Match ( AT3G13440.3 )
(BLAST)

001: MPPRIAAIRL VSSHREVYEP CDDSFALVDA LLADRTNLIE HNPKICMEIG CGSGYVITSL ILLLQNEVPG VHYLAIDTNP IATRVTKETL EAHGVNADVI
101: CADLATGLEK RLAGSVDVIV VNPPYVPTPE YEVGMEGIAS AWAGGENGRT VIDKILPVVD LLLSEKGWFY LVTLTSNFPA EICLMMRKKG YASRIVVQRS
201: TEEENLVILK FWRDKDEESQ DKETSSSSFV SQFSKSLSSL MEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.