CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71689
CDX81228
CDY18706
CDY31314
CDY32642
CDY38850
CDY46811
CDY51292
CDY56489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	CDX71689	AT5G51110.1	21798944
AT3G13440.1	CDY32642	AT5G51110.1	21798944
AT3G13440.1	CDY38850	AT5G51110.1	21798944
AT3G13440.1	CDX81228	AT5G64560.1	21798944
AT3G13440.1	CDY18706	AT5G64560.1	21798944
AT3G13440.1	CDY31314	AT5G64560.1	21798944
AT3G13440.1	CDY46811	AT5G64560.1	21798944
AT3G13440.1	CDY51292	AT5G64560.1	21798944
AT3G13440.1	CDY56489	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G13440.1	Thale cress	cytosol	79.52	71.22
CDY24184	Canola	plastid	87.15	70.45
CDY07090	Canola	plasma membrane	86.75	68.79
PGSC0003DMT400061225	Potato	cytosol	61.45	65.67
KRH65321	Soybean	cytosol	65.86	63.81
Solyc12g100070.1.1	Tomato	cytosol	49.0	62.24
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	60.24	55.15
CDY43990	Canola	nucleus	96.79	53.56
EER93176	Sorghum	cytosol	54.22	48.21
Zm00001d012932_P001	Maize	extracellular	53.82	48.2
HORVU5Hr1G114620.1	Barley	cytosol	54.22	47.04
TraesCS5A01G486400.1	Wheat	cytosol	54.22	47.04
TraesCS5D01G500400.1	Wheat	cytosol	54.22	47.04
Os03t0824200-01	Rice	cytosol	53.41	46.67
TraesCS5B01G500200.1	Wheat	plastid	54.22	45.92
Zm00001d011137_P001	Maize	plastid	23.29	35.58
Zm00001d051490_P001	Maize	cytosol	29.32	31.47
Zm00001d042153_P001	Maize	mitochondrion	45.38	19.09

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078GAZ3	UniProt:A0A078GAZ3	EnsemblPlants:CDY23600	ProteinID:CDY23600
ProteinID:CDY23600.1	InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00023811001
PFAM:PF05175	ScanProsite:PS00092	PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
InterPro:Small_mtfrase_dom	UniParc:UPI000182B735	SEG:seg	:	:	:

Description

BnaC05g39940DBnaC05g39940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAZ3]

Coordinates

chrLK032145:+:323222..323971

Molecular Weight (calculated)

27882.4 Da

IEP (calculated)

4.520

GRAVY (calculated)

-0.098

Length

249 amino acids

Sequence
(BLAST)

001: MSEKPPEIAD IMRVSSHREV YEPCDDSFAL VDALLADQTN LINHNPNLCM EIGCGSGYVI TSLILLLKSK LPTVHYLATD TNPIAARVTN QTLEAHGVKA
101: EIVCTDIASC LEERLAGSVD VMVVNPPYVP TPEYEVGMEG IASSWAGGEN GRSVIDRMLP VVDRLLSEKG WFYLVTLTSN YPAEICLMMR KRGFAWRILV
201: QRSTEEENLV ILKFWRDGDE ESLEKETSTA SLVSEFSRSL TSFMEKQWR

Best Arabidopsis Sequence Match ( AT3G13440.1 )
(BLAST)

001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.