Factsheet for TraesCS5B01G500200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G379500.1
TraesCS5A01G382400.1
TraesCS5A01G545700.1
TraesCS5B01G386300.1
TraesCS5D01G391700.1
TraesCSU01G129700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	TraesCS4B01G379500.1	AT5G51110.1	21798944
AT3G13440.1	TraesCS5A01G545700.1	AT5G51110.1	21798944
AT3G13440.1	TraesCSU01G129700.1	AT5G51110.1	21798944
AT3G13440.1	TraesCS5A01G382400.1	AT5G64560.1	21798944
AT3G13440.1	TraesCS5B01G386300.1	AT5G64560.1	21798944
AT3G13440.1	TraesCS5D01G391700.1	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G500400.1	Wheat	cytosol	96.26	98.61
TraesCS5A01G486400.1	Wheat	cytosol	95.58	97.91
HORVU5Hr1G114620.1	Barley	cytosol	95.58	97.91
Os03t0824200-01	Rice	cytosol	82.99	85.61
Zm00001d012932_P001	Maize	extracellular	73.13	77.34
EER93176	Sorghum	cytosol	73.13	76.79
Zm00001d011137_P001	Maize	plastid	35.03	63.19
PGSC0003DMT400061225	Potato	cytosol	47.28	59.66
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	54.42	58.82
KRH65321	Soybean	cytosol	50.34	57.59
Solyc12g100070.1.1	Tomato	cytosol	38.1	57.14
CDY23600	Canola	cytosol	45.92	54.22
Bra027435.1-P	Field mustard	cytosol	44.9	53.01
AT3G13440.1	Thale cress	cytosol	47.62	50.36
Bra039401.1-P	Field mustard	cytosol	20.41	46.88
Zm00001d051490_P001	Maize	cytosol	36.39	46.12
Bra039402.1-P	Field mustard	endoplasmic reticulum, extracellular	47.96	45.48
CDY07090	Canola	plasma membrane	47.96	44.9
CDY24184	Canola	plastid	46.94	44.81
Zm00001d042153_P001	Maize	mitochondrion	60.54	30.07
CDY43990	Canola	nucleus	45.24	29.56

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008276
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0032259	PFAM:PF05175	ScanProsite:PS00092
PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	InterPro:PrmC-related	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Small_mtfrase_dom
TIGRFAMs:TIGR00537	EnsemblPlantsGene:TraesCS5B01G500200	EnsemblPlants:TraesCS5B01G500200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:666207065..666209291

Molecular Weight (calculated)

31375.6 Da

IEP (calculated)

4.995

GRAVY (calculated)

0.013

Length

294 amino acids

Sequence
(BLAST)

001: MAAAPIPPPI ADGAAVSAVE GKLAELSTSC DLRTLPKRGK SASARTLNTA QIQLVASHPE VYEPCDDSFA LVDALLSDKA QLLTLQPSLC MEVGCGSGYV
101: ITSLAIMLRQ LGSGTQYLAT DINQHAVETT QATLEAHGVH ADVIATDIVS GLEKRLAGMV DVVVVNPPYV PTPEEEIGMK GIASSWAGGL NGRQVIDRIL
201: PAVRELLSEK GCLYMIALED NDPLGICHLM NEKGFASRVL LKRCTDEESL YVLKFWQDAA AGANASQSGR SPRAESWLSQ LPFKSFWHKN TGSS

Best Arabidopsis Sequence Match ( AT3G13440.3 )
(BLAST)

001: MPPRIAAIRL VSSHREVYEP CDDSFALVDA LLADRTNLIE HNPKICMEIG CGSGYVITSL ILLLQNEVPG VHYLAIDTNP IATRVTKETL EAHGVNADVI
101: CADLATGLEK RLAGSVDVIV VNPPYVPTPE YEVGMEGIAS AWAGGENGRT VIDKILPVVD LLLSEKGWFY LVTLTSNFPA EICLMMRKKG YASRIVVQRS
201: TEEENLVILK FWRDKDEESQ DKETSSSSFV SQFSKSLSSL MEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.