Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G486400.1 | Wheat | cytosol | 99.3 | 99.3 |
| HORVU5Hr1G114620.1 | Barley | cytosol | 99.3 | 99.3 |
| TraesCS5B01G500200.1 | Wheat | plastid | 98.61 | 96.26 |
| Os03t0824200-01 | Rice | cytosol | 85.71 | 86.32 |
| Zm00001d012932_P001 | Maize | extracellular | 74.91 | 77.34 |
| EER93176 | Sorghum | cytosol | 74.56 | 76.43 |
| Zm00001d011137_P001 | Maize | plastid | 35.54 | 62.58 |
| PGSC0003DMT400061225 | Potato | cytosol | 48.43 | 59.66 |
| GSMUA_Achr1P18380_001 | Banana | extracellular, plasma membrane | 55.75 | 58.82 |
| KRH65321 | Soybean | cytosol | 51.57 | 57.59 |
| Solyc12g100070.1.1 | Tomato | cytosol | 39.02 | 57.14 |
| CDY23600 | Canola | cytosol | 47.04 | 54.22 |
| Bra027435.1-P | Field mustard | cytosol | 45.99 | 53.01 |
| AT3G13440.1 | Thale cress | cytosol | 48.78 | 50.36 |
| Bra039401.1-P | Field mustard | cytosol | 20.91 | 46.88 |
| Bra039402.1-P | Field mustard | endoplasmic reticulum, extracellular | 49.83 | 46.13 |
| Zm00001d051490_P001 | Maize | cytosol | 37.28 | 46.12 |
| CDY07090 | Canola | plasma membrane | 49.48 | 45.22 |
| CDY24184 | Canola | plastid | 47.74 | 44.48 |
| Zm00001d042153_P001 | Maize | mitochondrion | 61.67 | 29.9 |
| CDY43990 | Canola | nucleus | 46.34 | 29.56 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.2 | InterPro:DNA_methylase_N6_adenine_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008276 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0032259 | PFAM:PF05175 | ScanProsite:PS00092 |
| PANTHER:PTHR18895 | PANTHER:PTHR18895:SF71 | InterPro:PrmC-related | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 | InterPro:Small_mtfrase_dom |
| TIGRFAMs:TIGR00537 | EnsemblPlantsGene:TraesCS5D01G500400 | EnsemblPlants:TraesCS5D01G500400.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:+:528978403..528980330
Molecular Weight (calculated)
30691.7 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.019
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGDGAAVS AVEGKLAELS TSCDLRTLPK RGKSASARTL NTAQIQLVAS HPEVYEPCDD SFALVDALLS DKAQLLTLQP SLCMEVGCGS GYVITSLAIM
101: LRQLGSGTQY LATDINQHAV ETTQATLEAH GVHADVIATD IVSGLEKRLA GMVDVVVVNP PYVPTPEEEI GMKGIASSWA GGLNGRQVID RILPAVRELL
201: SEKGCLYMIA LEDNDPLGIC HLMNEKGFAS RVLLKRCTDE ESLYVLKFWQ DAAAGANASQ SGRSPRAESW LSQLPFKSFW HKNTGSS
101: LRQLGSGTQY LATDINQHAV ETTQATLEAH GVHADVIATD IVSGLEKRLA GMVDVVVVNP PYVPTPEEEI GMKGIASSWA GGLNGRQVID RILPAVRELL
201: SEKGCLYMIA LEDNDPLGIC HLMNEKGFAS RVLLKRCTDE ESLYVLKFWQ DAAAGANASQ SGRSPRAESW LSQLPFKSFW HKNTGSS
001: MPPRIAAIRL VSSHREVYEP CDDSFALVDA LLADRTNLIE HNPKICMEIG CGSGYVITSL ILLLQNEVPG VHYLAIDTNP IATRVTKETL EAHGVNADVI
101: CADLATGLEK RLAGSVDVIV VNPPYVPTPE YEVGMEGIAS AWAGGENGRT VIDKILPVVD LLLSEKGWFY LVTLTSNFPA EICLMMRKKG YASRIVVQRS
201: TEEENLVILK FWRDKDEESQ DKETSSSSFV SQFSKSLSSL MEKQWR
101: CADLATGLEK RLAGSVDVIV VNPPYVPTPE YEVGMEGIAS AWAGGENGRT VIDKILPVVD LLLSEKGWFY LVTLTSNFPA EICLMMRKKG YASRIVVQRS
201: TEEENLVILK FWRDKDEESQ DKETSSSSFV SQFSKSLSSL MEKQWR
Arabidopsis Description
AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.