CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92427
KRH33344
KRH34378
KRH70391

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	KRH33344	AT5G51110.1	21798944
AT3G13440.1	KRH70391	AT5G51110.1	21798944
AT3G13440.1	KRG92427	AT5G64560.1	21798944
AT3G13440.1	KRH34378	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061225	Potato	cytosol	69.26	76.39
Solyc12g100070.1.1	Tomato	cytosol	56.42	73.98
CDY23600	Canola	cytosol	63.81	65.86
Bra027435.1-P	Field mustard	cytosol	62.65	64.66
Bra039401.1-P	Field mustard	cytosol	31.52	63.28
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	66.15	62.5
AT3G13440.1	Thale cress	cytosol	66.54	61.51
CDY24184	Canola	plastid	64.98	54.22
Bra039402.1-P	Field mustard	endoplasmic reticulum, extracellular	64.59	53.55
EER93176	Sorghum	cytosol	57.98	53.21
Os03t0824200-01	Rice	cytosol	58.75	52.98
Zm00001d012932_P001	Maize	extracellular	57.2	52.88
CDY07090	Canola	plasma membrane	64.2	52.55
HORVU5Hr1G114620.1	Barley	cytosol	57.59	51.57
TraesCS5D01G500400.1	Wheat	cytosol	57.59	51.57
TraesCS5A01G486400.1	Wheat	cytosol	57.59	51.57
TraesCS5B01G500200.1	Wheat	plastid	57.59	50.34
Zm00001d011137_P001	Maize	plastid	26.46	41.72
CDY43990	Canola	nucleus	62.65	35.78
Zm00001d051490_P001	Maize	cytosol	31.52	34.91
Zm00001d042153_P001	Maize	mitochondrion	48.64	21.11

Protein Annotations

EntrezGene:100790739	Gene3D:3.40.50.150	MapMan:35.2	EMBL:ACUP02001328	InterPro:DNA_methylase_N6_adenine_CS	EnsemblPlantsGene:GLYMA_03G027700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0008276	GO:GO:0008757	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0032259	UniProt:I1JKQ0	EnsemblPlants:KRH65321	ProteinID:KRH65321	ProteinID:KRH65321.1	ProteinID:KRH65322.1
ProteinID:KRH65323.1	ProteinID:KRH65324.1	PFAM:PF05175	ScanProsite:PS00092	PANTHER:PTHR18895	PANTHER:PTHR18895:SF71
InterPro:PrmC-related	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Small_mtfrase_dom	TIGRFAMs:TIGR00537	UniParc:UPI00023BC9FA

Description

hypothetical protein

Coordinates

chr3:-:3035702..3042238

Molecular Weight (calculated)

28236.5 Da

IEP (calculated)

4.626

GRAVY (calculated)

-0.124

Length

257 amino acids

Sequence
(BLAST)

001: MGSHKELPRT AQIHLVSSHQ EVYEPCDDSF ALVDALLADR NNLLEHRPTL CMEIGCGSGY VITSLALLLG QEGCGINYIA TDINPHAVRV THETLEAHGV
101: GAELIVTDIA SGLEDRLAGL VDVIVVNPPY VPTPEDEVGV EGIMSSWAGG ENGRSVIDKI LPVADRLLSE KGWLYMVTLT ANNPSEICHQ MRKKGYASKI
201: VVQRSTEEES LHIIKFWRDF DTEANETDQS ASGFISFMLT QIPLLSYWRG TNSNNKS

Best Arabidopsis Sequence Match ( AT3G13440.1 )
(BLAST)

001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.