Factsheet for Solyc12g100070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	Solyc03g005390.2.1	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061225	Potato	cytosol	95.92	80.69
Bra039401.1-P	Field mustard	cytosol	38.78	59.38
KRH65321	Soybean	cytosol	73.98	56.42
CDY23600	Canola	cytosol	62.24	49.0
Bra027435.1-P	Field mustard	cytosol	60.71	47.79
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	63.78	45.96
AT3G13440.1	Thale cress	cytosol	64.29	45.32
Bra039402.1-P	Field mustard	endoplasmic reticulum, extracellular	64.8	40.97
CDY24184	Canola	plastid	64.29	40.91
Zm00001d012932_P001	Maize	extracellular	57.65	40.65
EER93176	Sorghum	cytosol	57.14	40.0
CDY07090	Canola	plasma membrane	63.78	39.81
Os03t0824200-01	Rice	cytosol	57.65	39.65
HORVU5Hr1G114620.1	Barley	cytosol	57.14	39.02
TraesCS5D01G500400.1	Wheat	cytosol	57.14	39.02
TraesCS5A01G486400.1	Wheat	cytosol	57.14	39.02
TraesCS5B01G500200.1	Wheat	plastid	57.14	38.1
Zm00001d051490_P001	Maize	cytosol	38.27	32.33
CDY43990	Canola	nucleus	62.24	27.11
Zm00001d011137_P001	Maize	plastid	18.37	22.09
Zm00001d042153_P001	Maize	mitochondrion	46.94	15.54

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008276	GO:GO:0008757
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0032259	UniProt:K4DI28	PFAM:PF05175
ScanProsite:PS00092	PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Small_mtfrase_dom
EnsemblPlantsGene:Solyc12g100070.1	EnsemblPlants:Solyc12g100070.1.1	UniParc:UPI000276AB68	:	:	:

Description

No Description!

Coordinates

chr12:-:66949194..66949784

Molecular Weight (calculated)

21779.2 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.128

Length

196 amino acids

Sequence
(BLAST)

001: MLQQKPSICM EIGCGSGYVI TSLAVMLGDE GFVPYYIATD INPHAIRVTR ETMDAHGVYA ELVNTDITSG LEKRLARSVD VLVVNPPYVP TPEDEVGFEG
101: ITSAWAGGEN GRSVIDKILP AANNLLSEKG WLYMVTLTAN KPSEICLEMR KKGYASRIIL QRSTEEESLH IIKFWRDSDS HLELKNLSYW SKLVGN

Best Arabidopsis Sequence Match ( AT3G13440.3 )
(BLAST)

001: MPPRIAAIRL VSSHREVYEP CDDSFALVDA LLADRTNLIE HNPKICMEIG CGSGYVITSL ILLLQNEVPG VHYLAIDTNP IATRVTKETL EAHGVNADVI
101: CADLATGLEK RLAGSVDVIV VNPPYVPTPE YEVGMEGIAS AWAGGENGRT VIDKILPVVD LLLSEKGWFY LVTLTSNFPA EICLMMRKKG YASRIVVQRS
201: TEEENLVILK FWRDKDEESQ DKETSSSSFV SQFSKSLSSL MEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.