Factsheet for Solyc03g005390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
mitochondrion 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0742400-01	Rice	plasma membrane	53.67	85.14
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	81.52	82.78
KRG92427	Soybean	cytosol, peroxisome, plasma membrane	78.99	78.99
EER90897	Sorghum	cytosol	77.22	78.81
KRH34378	Soybean	cytosol, peroxisome, plastid	76.96	77.95
TraesCS5D01G391700.1	Wheat	plastid	76.46	77.84
HORVU5Hr1G094250.1	Barley	plastid	76.2	77.58
CDX81228	Canola	cytosol, mitochondrion, plastid	72.41	77.3
AT5G64560.1	Thale cress	cytosol	76.96	77.16
TraesCS5A01G382400.1	Wheat	plastid	75.95	76.53
CDY56489	Canola	cytosol, peroxisome, plastid	72.15	75.4
Bra037781.1-P	Field mustard	cytosol, mitochondrion, plastid	73.16	75.26
CDY18706	Canola	cytosol, mitochondrion, plastid	73.16	75.26
TraesCS5B01G386300.1	Wheat	plastid	73.92	75.26
CDY51292	Canola	cytosol, peroxisome, plastid	71.9	75.13
Bra028621.1-P	Field mustard	cytosol	73.67	74.81
CDX85800	Canola	cytosol	73.67	74.81
CDY64844	Canola	cytosol	73.16	74.29
CDY64845	Canola	mitochondrion, peroxisome, plastid	68.61	74.04
Bra031913.1-P	Field mustard	cytosol	63.8	73.9
Bra024309.1-P	Field mustard	cytosol, peroxisome, plastid	73.16	73.72
AT5G09690.2	Thale cress	cytosol	71.39	71.03
CDY46811	Canola	cytosol	67.34	70.93
CDY31314	Canola	cytosol	67.59	69.53
Solyc09g065920.2.1	Tomato	nucleus	65.82	68.97
AT5G09720.2	Thale cress	cytosol	47.59	63.95
Solyc01g103890.2.1	Tomato	nucleus	45.06	41.2
Solyc06g068490.2.1	Tomato	plastid	45.57	39.05
Solyc05g012220.2.1	Tomato	cytosol, peroxisome, plasma membrane	38.73	36.87
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	44.56	35.34
Solyc11g066660.1.1	Tomato	plastid	21.52	19.02

Protein Annotations

Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	UniProt:K4BDW3	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544
PANTHER:PTHR13890	PANTHER:PTHR13890:SF8	SUPFAM:SSF144083	EnsemblPlantsGene:Solyc03g005390.2	EnsemblPlants:Solyc03g005390.2.1	TMHMM:TMhelix
UniParc:UPI000276907E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:224656..235140

Molecular Weight (calculated)

44200.0 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.146

Length

395 amino acids

Sequence
(BLAST)

001: MGREGGGHVV PVDPGTVVGG LKKKGAGARS WLLMDASGLE TVLDVDKYEI MHRVQIHARD LRIIDPLLSY PSAILGRERA IVLNLEHIKA IITSEEVLLR
101: DPSDDNVTPV VEELKRRLKP MNANREDQRE EKDSNVQHDI EATDEDESPF EFRALEVALE AICSYLAART LELETAVYPA LDMLTSKISS RNLDRVRKLK
201: SQMTRLTARV QKVRDELEQL LDDDDDMADL YLSRKLAGAS PVSGSGAASW FLASPTIGSK ISRASRASIA TVRGDENDVE ELEMLLEAYF MQIDGTFNKL
301: TTLREYIDNT EDYINIQLDN HRNQLIQLEL FLSSGTVCLS IYSLIAGIFG MNIPYSWNEE HGYMFKWVVA VSGIICAVIF LLIISYARYK GLVGS

Best Arabidopsis Sequence Match ( AT5G64560.1 )
(BLAST)

001: MAQNGYLVPA DPSAVVTVKK KTPQASWALI DATGQSEPLD VDKYEIMHRV QIHARDLRIL DPNLSYPSTI LGRERAIVLN LEHIKAIITS EEVLLRDPSD
101: ENVIPVVEEL RRRLPVGNAS HNGGQGDGKE IAGAQNDGDT GDEDESPFEF RALEVALEAI CSFLAARTAE LETAAYPALD ELTSKISSRN LDRVRKLKSA
201: MTRLTARVQK VRDELEQLLD DDDDMADLYL SRKLSSASSP ISSIGEPNWY TTSPTIGSKI SRASRASLAT VHGDENDVEE LEMLLEAYFM QIDSTLNRLT
301: TLREYIDDTE DYINIQLDNH RNQLIQLELV LSSGTVCLSM YSLVAGIFGM NIPYTWNDGH GYMFKYVVGL TGTLCVVVFV IIMSYARYKG LVGS

Arabidopsis Description

MRS2-2Magnesium transporter MRS2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.