Factsheet for VIT_05s0020g04720.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0742400-01	Rice	plasma membrane	56.56	88.35
KRH34378	Soybean	cytosol, peroxisome, plastid	83.8	83.59
KRG92427	Soybean	cytosol, peroxisome, plasma membrane	84.83	83.54
EER90897	Sorghum	cytosol	82.52	82.95
TraesCS5D01G391700.1	Wheat	plastid	82.52	82.73
HORVU5Hr1G094250.1	Barley	plastid	82.01	82.22
CDX81228	Canola	cytosol, mitochondrion, plastid	77.89	81.89
Solyc03g005390.2.1	Tomato	cytosol, peroxisome, vacuole	82.78	81.52
TraesCS5A01G382400.1	Wheat	plastid	82.01	81.38
Bra037781.1-P	Field mustard	cytosol, mitochondrion, plastid	79.69	80.73
CDY18706	Canola	cytosol, mitochondrion, plastid	79.69	80.73
AT5G64560.1	Thale cress	cytosol	81.49	80.46
TraesCS5B01G386300.1	Wheat	plastid	79.95	80.15
Bra031913.1-P	Field mustard	cytosol	70.18	80.06
VIT_07s0141g00590.t01	Wine grape	cytosol	79.95	79.95
CDY56489	Canola	cytosol, peroxisome, plastid	77.38	79.63
CDY51292	Canola	cytosol, peroxisome, plastid	77.12	79.37
Bra024309.1-P	Field mustard	cytosol, peroxisome, plastid	79.43	78.83
CDX85800	Canola	cytosol	77.38	77.38
Bra028621.1-P	Field mustard	cytosol	77.38	77.38
CDY46811	Canola	cytosol	73.78	76.53
CDY64845	Canola	mitochondrion, peroxisome, plastid	71.98	76.5
CDY64844	Canola	cytosol	76.35	76.35
CDY31314	Canola	cytosol	74.81	75.78
AT5G09690.2	Thale cress	cytosol	75.58	74.06
AT5G09720.2	Thale cress	cytosol	50.39	66.67
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	48.84	42.79
VIT_12s0034g02550.t01	Wine grape	plastid	48.33	41.5
VIT_01s0011g00450.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	44.47	41.09
VIT_09s0018g00570.t01	Wine grape	nucleus	24.42	40.6
VIT_03s0091g01190.t01	Wine grape	cytosol	49.61	38.52
VIT_07s0031g02820.t01	Wine grape	cytosol	41.65	36.57
VIT_06s0061g01060.t01	Wine grape	plastid	23.65	20.63

Protein Annotations

EntrezGene:100244262	wikigene:100244262	Gene3D:2.40.128.330	MapMan:24.3.3.1	ProteinID:CBI26360	ProteinID:CBI26360.3
ncoils:Coil	UniProt:D7T789	EMBL:FN595749	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	EntrezGene:LOC100244262	wikigene:LOC100244262	InterPro:MgTranspt_CorA/ZnTranspt_ZntB
PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF8	SUPFAM:SSF144083	TIGR:TC65720	TIGR:TC65975
TMHMM:TMhelix	UniParc:UPI00019833AB	ArrayExpress:VIT_05s0020g04720	EnsemblPlantsGene:VIT_05s0020g04720	EnsemblPlants:VIT_05s0020g04720.t01	RefSeq:XP_002284181
RefSeq:XP_002284181.1	RefSeq:XP_002284188	RefSeq:XP_002284188.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:6575906..6586394

Molecular Weight (calculated)

43473.1 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.137

Length

389 amino acids

Sequence
(BLAST)

001: MGREGYVVPA DPQAAMKKKT ASRNWIMMDC SGEKTVLDLD KYAIMHRVQI HARDLRILDP LLSYPSTILG RERAIVLNLE HIKAIITAEE VLLRDPSDEN
101: VIPVVEELQR RLPPVNAFRQ GQGDGKDYGH HDVEAGEEDE SPFEFRALEV ALEAICSFLA ARTTELETAA YPALDQLTSK ISSLNLDRVR KLKSAMTRLT
201: ARVQKVRDEL EQLLDDDDDM ADLYLSRKLA GASSPVSGSG APNWFAASPT IGSKISRVSR ASVATVRGDE NDVEELEMLL EAYFMQIDGT LNKLTTLREY
301: IDDTEDYINI QLDNHRNQLI QLELFLSSGT VCLSIYSLVA GIFGMNIPYT WNDDHGFMFK WVVIVTGVSC ALLFVVIMSY ARHKGLVGS

Best Arabidopsis Sequence Match ( AT5G64560.1 )
(BLAST)

001: MAQNGYLVPA DPSAVVTVKK KTPQASWALI DATGQSEPLD VDKYEIMHRV QIHARDLRIL DPNLSYPSTI LGRERAIVLN LEHIKAIITS EEVLLRDPSD
101: ENVIPVVEEL RRRLPVGNAS HNGGQGDGKE IAGAQNDGDT GDEDESPFEF RALEVALEAI CSFLAARTAE LETAAYPALD ELTSKISSRN LDRVRKLKSA
201: MTRLTARVQK VRDELEQLLD DDDDMADLYL SRKLSSASSP ISSIGEPNWY TTSPTIGSKI SRASRASLAT VHGDENDVEE LEMLLEAYFM QIDSTLNRLT
301: TLREYIDDTE DYINIQLDNH RNQLIQLELV LSSGTVCLSM YSLVAGIFGM NIPYTWNDGH GYMFKYVVGL TGTLCVVVFV IIMSYARYKG LVGS

Arabidopsis Description

MRS2-2Magnesium transporter MRS2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.