Factsheet for VIT_01s0011g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70907	Soybean	cytosol, nucleus, plasma membrane	72.21	73.43
Solyc05g012220.2.1	Tomato	cytosol, peroxisome, plasma membrane	70.55	71.57
PGSC0003DMT400072765	Potato	cytosol, peroxisome, plasma membrane	31.83	67.68
AT2G03620.2	Thale cress	cytosol, nucleus, peroxisome	67.46	67.46
Bra025121.1-P	Field mustard	cytosol, nucleus, peroxisome	66.51	66.51
CDY51207	Canola	cytosol, nucleus, peroxisome	66.51	66.51
CDY36615	Canola	cytosol, nucleus, peroxisome	66.51	66.51
CDY02984	Canola	cytosol, peroxisome, plasma membrane	66.51	66.51
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	63.66	64.73
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	58.67	55.63
VIT_09s0018g00570.t01	Wine grape	nucleus	28.5	51.28
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.09	44.47
VIT_07s0141g00590.t01	Wine grape	cytosol	40.14	43.44
VIT_07s0031g02820.t01	Wine grape	cytosol	38.72	36.79
VIT_03s0091g01190.t01	Wine grape	cytosol	41.81	35.13
VIT_12s0034g02550.t01	Wine grape	plastid	36.58	34.0
VIT_06s0061g01060.t01	Wine grape	plastid	20.19	19.06

Protein Annotations

Gene3D:1.20.58.340	EntrezGene:100262794	wikigene:100262794	Gene3D:2.40.128.330	MapMan:24.3.3.1	ProteinID:CCB51080
ProteinID:CCB51080.1	ncoils:Coil	UniProt:F6HFU6	EMBL:FN595752	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	EntrezGene:LOC100262794	wikigene:LOC100262794
InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF11	SUPFAM:SSF144083	TMHMM:TMhelix
UniParc:UPI00015C7E18	ArrayExpress:VIT_01s0011g00450	EnsemblPlantsGene:VIT_01s0011g00450	EnsemblPlants:VIT_01s0011g00450.t01	unigene:Vvi.19562	RefSeq:XP_002274070
RefSeq:XP_002274070.1	RefSeq:XP_010649756.1	RefSeq:XP_010649768.1	RefSeq:XP_010649772.1	RefSeq:XP_010649777.1	RefSeq:XP_019075808.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:453463..457919

Molecular Weight (calculated)

47452.1 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.107

Length

421 amino acids

Sequence
(BLAST)

001: MEASQTPYRP NSINTSASSH NIVRCNADGH AINLFQGPGF PGRKKRGHGS RSWIEIDQNG NSKTLELDKA ALMRYCSLPA RDLRLLDPLF IYPSTILGRE
101: KAIVVNLEQI RCIITAEEVI LMNSLDGCVV QYKSELCKRL QNNKDQADDL PFEFRALELA LELTCMSLDA QVKELEMEIY PVLDELASSI STLNLERVRR
201: FKGHLLALTQ RVQKVRDEIE HLMDDDGDMA EMYLTEKKQR MEAYPWNDLH SLSNVSGGTR VLPASAPVSP VESISGSQRL QRAFSTIMNS SKHGSFTGSS
301: NNGENIEQLE MLLEAYFVFI DNTLNKLLSL KEYIDDTEDL INIKLGNVQN QLIQFELLLT AATFVATIFA AVTGVFGMNF TATIFDYPSA FNWVLVITGV
401: ICGFLYFSFL LYFRHKKVFP S

Best Arabidopsis Sequence Match ( AT2G03620.2 )
(BLAST)

001: MGEQLDPFSA SNLPDFISSQ KIGRPVNFEG QTNRGHPFSG LKKRGQSSRS WVKIDQDGNS AVLELDKATI MKRCSLPSRD LRLLDPLFIY PSSILGRERA
101: IVVSLEKIRC IITAEEVILM NARDASVVQY QSELCKRLQS NHNLNVKDDL PFEFKALELV LELSCLSLDA QVNELEMEVY PVLDELATNI STLNLEHVRR
201: LKGRLLTLTQ KVQKVCDEIE HLMDDDDDMA EMYLTEKKER AEAHASEELE DNIGEDFESS GIVSKSAPVS PVGSTSGNFG KLQRAFSSIV GSHKSLLSSS
301: SIGENIDQLE MLLEAYFVVV DNTLSKLSSL KEYIDDTEDL INIKLGNVQN QLIQFQLLLT AATFVAAIFA AVTAVFGMNL QDSVFQNPTT FQYVLLITGI
401: GCGFLYFGFV LYFKHKKVFP L

Arabidopsis Description

MRS2-5Magnesium transporter MRS2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.