Factsheet for VIT_09s0018g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086400.6	Barley	cytosol	60.68	47.02
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	67.52	45.4
TraesCS7B01G414200.1	Wheat	endoplasmic reticulum, plasma membrane	67.09	45.11
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	80.77	42.57
Zm00001d000430_P001	Maize	plastid	69.66	38.08
Zm00001d036714_P002	Maize	plastid	68.8	37.44
HORVU7Hr1G113400.9	Barley	plastid	68.38	36.28
Os06t0650800-01	Rice	plasma membrane	67.52	36.24
TraesCS7A01G506600.1	Wheat	plastid	68.38	36.12
TraesCS7D01G494700.1	Wheat	plastid	68.38	35.96
TraesCS2B01G375200.1	Wheat	cytosol, peroxisome, plasma membrane	62.82	34.35
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	62.82	34.35
TraesCS2A01G354100.1	Wheat	cytosol, peroxisome, plasma membrane	62.82	34.35
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	62.39	33.11
Zm00001d003125_P001	Maize	cytosol, nucleus, plasma membrane, plastid	61.97	32.22
VIT_01s0011g00450.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	51.28	28.5
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	40.6	24.42
VIT_07s0141g00590.t01	Wine grape	cytosol	40.6	24.42
VIT_07s0031g02820.t01	Wine grape	cytosol	38.46	20.32
VIT_03s0091g01190.t01	Wine grape	cytosol	43.16	20.16
Os04t0501100-00	Rice	cytosol, plasma membrane	18.8	19.56
VIT_12s0034g02550.t01	Wine grape	plastid	33.76	17.44
VIT_06s0061g01060.t01	Wine grape	plastid	19.23	10.09

Protein Annotations

ArrayExpress:VIT_09s0018g00570	EMBL:FN595513	EnsemblPlants:VIT_09s0018g00570.t01	EnsemblPlantsGene:VIT_09s0018g00570	Gene3D:1.20.58.340	GO:GO:0003674
GO:GO:0005215	GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:1903830	ncoils:Coil
PANTHER:PTHR13890	PANTHER:PTHR13890:SF10	ProteinID:CCB49672	ProteinID:CCB49672.1	SEG:seg	UniParc:UPI000210929C
UniProt:F6HBS3	MapMan:24.3.3.1	:	:	:	:

Description

No Description!

Coordinates

chr9:-:16793442..16794311

Molecular Weight (calculated)

27035.7 Da

IEP (calculated)

5.262

GRAVY (calculated)

-0.290

Length

234 amino acids

Sequence
(BLAST)

001: MRIHTPTCQN LDYLSKVELP NLAIILINQA AELEIEAYPL LDELTSKIST LNLERARRLK SRLVALTRRV QKVRDEIEQL MDDDGDMAEM YLTEKKRRME
101: SSFYGEQSLM GYRSIDGALS VSAPVSPVSS PPETRRLEKS LSVTRRSRHE SMKSSESATE SIEELEMLLE AYFVVIDSTL NKLTSLKEYI DDTEDFINIQ
201: LVRVVSFLYV WFPESIKKRK KIAIKNDFSY LILL

Best Arabidopsis Sequence Match ( AT1G16010.1 )
(BLAST)

001: MSELKERLLP PRPASAMNLR DASVTRPSAS GRPPLLGVDV LGLKKRGQGL RSWIRVDTSG NTQVMEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KTSSVGEMWQ QENSQLSRRR SRSFDNAFEN SSPDYLPFEF RALEIALEAA CTFLDSQASE
201: LEIEAYPLLD ELTSKISTLN LERVRRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKRRMEGS MYGDQSLLGY RSNDGLSVSA PVSPVSSPPD
301: SRRLDKSLSI ARSRHDSARS SEGAENIEEL EMLLEAYFVV IDSTLNKLTS LKEYIDDTED FINIQLDNVR NQLIQFELLL TTATFVVAIF GVVAGIFGMN
401: FEIDFFNQPG AFRWVLIITG VCGFVIFSAF VWFFKYRRLM PL

Arabidopsis Description

MRS2-1Magnesium transporter MRS2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.