Factsheet for VIT_03s0091g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05250.t01
VIT_14s0006g02980.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19640.1	VIT_01s0011g05250.t01	AT1G70780.1	21798944
AT3G19640.1	VIT_14s0006g02980.t01	AT1G70780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77919	Soybean	cytosol	61.08	77.86
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	76.05	76.51
PGSC0003DMT400066130	Potato	cytosol, peroxisome, plastid	75.85	76.31
KRH27585	Soybean	cytosol	59.08	74.19
Bra022441.1-P	Field mustard	cytosol	60.68	68.93
CDY66275	Canola	cytosol, peroxisome, plasma membrane	60.68	68.93
AT3G19640.1	Thale cress	cytosol, golgi, peroxisome, plastid	64.07	66.32
Bra038223.1-P	Field mustard	cytosol, golgi, peroxisome	59.08	64.35
CDX95430	Canola	cytosol, golgi, peroxisome	58.28	64.18
CDY42196	Canola	cytosol	58.08	63.82
GSMUA_Achr5P01890_001	Banana	nucleus	61.48	62.22
VIT_07s0031g02820.t01	Wine grape	cytosol	45.71	51.69
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	38.52	49.61
VIT_07s0141g00590.t01	Wine grape	cytosol	37.52	48.33
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	40.72	45.95
VIT_09s0018g00570.t01	Wine grape	nucleus	20.16	43.16
CDY58861	Canola	nucleus	61.88	42.47
VIT_01s0011g00450.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	35.13	41.81
VIT_12s0034g02550.t01	Wine grape	plastid	32.73	36.2
VIT_06s0061g01060.t01	Wine grape	plastid	17.56	19.73

Protein Annotations

Gene3D:1.20.58.340	EntrezGene:100258345	wikigene:100258345	Gene3D:2.40.128.330	MapMan:24.3.3.1	EMBL:AM468926
ProteinID:CAN74924	ProteinID:CAN74924.1	ProteinID:CCB47692	ProteinID:CCB47692.1	ncoils:Coil	UniProt:F6H692
EMBL:FN595242	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	GO:GO:0055085
GO:GO:1903830	EntrezGene:LOC100258345	wikigene:LOC100258345	PANTHER:PTHR13890	PANTHER:PTHR13890:SF4	TIGR:TC70356
TMHMM:TMhelix	UniParc:UPI000210924C	ArrayExpress:VIT_03s0091g01190	EnsemblPlantsGene:VIT_03s0091g01190	EnsemblPlants:VIT_03s0091g01190.t01	unigene:Vvi.10923
RefSeq:XP_002268333	RefSeq:XP_002268333.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:7831919..7853120

Molecular Weight (calculated)

55357.7 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.308

Length

501 amino acids

Sequence
(BLAST)

001: MRNPPSIPSK SGLAPPEEDP DPARPNGSVG VGGAAGIRKK GTGVRAWLLL DTTGQAQVVE AGKHAIMRRT GLPARDLRIL DPLLSYPSTV LGRERAIVIN
101: LEHIKAIITC QEVLLLNSKD PSVTPFVEEL QRRLLRLHHA TKSHEGGMHA TNTDWTNLYD LGEPQSRVVS PQNFSGDFSQ FQDQDEGAKA DGRPGLENQD
201: GLKVLPFEFI ALEACLEAAC SCLENEARTL EQEAHPALDK LTSKISTLNL ERVRQIKSRL VAITGRVQKV RDELEHLLDD DEDMAEMYLT DKMIQQHLEN
301: SSVSSIHERD GMDDGVLHAD MDDGIPDEIS LEANGVSATY EGDLQNIDNP QEHLFGTPHA LGRDSHGTHT STTHSAISKH LDVEELEMLL EAYFVQIDGT
401: LNKLSTLREY VDDTEDYINI MLDDKQNHLL QMGVMLTTAT LVVSAFVVVA GIFGMNIHIE LFDDKKSGVQ EFLWTVGGGA TGSIFLYVIA IAWCRHKRLL
501: E

Best Arabidopsis Sequence Match ( AT3G19640.1 )
(BLAST)

001: MRGARPDEFN FSTNPSTPNT GQPTPTYPAG VGGGGGGRKK GVGVRTWLVL NSSGQSEPKE EGKHSIMRRT GLPARDLRIL DPLLSYPSTV LGRERAIVIN
101: LEHIKAIITA QEVLLLNSKD PSVSPFIDEL QRRILCHHHA TKPQEEQNSG GEPHTRVDPA QGEAGTEQSS GDQGSEAKKD AKQSLENQDG SKVLPFEFVA
201: LEACLEAASS SLEHEALRLE LEAHPALDKL TSKISTLNLE RVRQIKSRLV AITGRVQKVR DELEHLLDDD EDMAEMYLTE KLAQKLEDSS NSSMNESDTF
301: EVDLPQGDED DRLPPEFASE ANRDGRYLQA NDAHELLMST QSALSRNSRG THTSSTRSAM TNKLDVEELE MLLEAYFVQI DGILNKLSTL REYVDDTEDY
401: INIMLDDKQN HLLQMGVMLT TATLVMSAFI AVAGVFGMNI TIELFTDNKH GPSRFIWTVI GGSIGSICLY VGAIGWCKYK RLLE

Arabidopsis Description

MRS2-3MRS2-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VLJ7]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.