CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68330
CDX96277
CDY03721
CDY09482
CDY11545
CDY23481

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19640.1	CDX68330	AT1G70780.1	21798944
AT3G19640.1	CDX96277	AT1G70780.1	21798944
AT3G19640.1	CDY03721	AT1G70780.1	21798944
AT3G19640.1	CDY09482	AT1G70780.1	21798944
AT3G19640.1	CDY11545	AT1G70780.1	21798944
AT3G19640.1	CDY23481	AT1G70780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66275	Canola	cytosol, peroxisome, plasma membrane	59.18	97.96
Bra022441.1-P	Field mustard	cytosol	59.04	97.73
AT3G19640.1	Thale cress	cytosol, golgi, peroxisome, plastid	53.42	80.58
CDY42196	Canola	cytosol	47.67	76.32
CDX95430	Canola	cytosol, golgi, peroxisome	47.4	76.04
KRH77919	Soybean	cytosol	37.95	70.48
KRH27585	Soybean	cytosol	37.26	68.17
VIT_03s0091g01190.t01	Wine grape	cytosol	42.47	61.88
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	41.37	60.64
PGSC0003DMT400066130	Potato	cytosol, peroxisome, plastid	41.1	60.24
GSMUA_Achr5P01890_001	Banana	nucleus	35.75	52.73
Zm00001d012102_P001	Maize	mitochondrion	31.92	52.6
TraesCS3B01G448800.1	Wheat	mitochondrion	32.05	52.12
EES04071	Sorghum	mitochondrion	31.51	51.92
TraesCS3A01G414000.1	Wheat	mitochondrion	32.05	51.88
HORVU3Hr1G092200.1	Barley	mitochondrion	31.78	51.79
TraesCS3D01G408500.1	Wheat	mitochondrion	31.92	51.78
Zm00001d042441_P001	Maize	mitochondrion	31.37	51.69
Os01t0908500-01	Rice	plasma membrane	31.37	51.58
OQU81611	Sorghum	peroxisome, plasma membrane, plastid	8.9	51.18
TraesCS3A01G380600.1	Wheat	mitochondrion	27.81	50.12
TraesCS3B01G413200.1	Wheat	mitochondrion	27.67	49.88
KXG25477	Sorghum	plastid	24.52	49.86
TraesCS3D01G373700.1	Wheat	mitochondrion	27.53	49.63
HORVU3Hr1G082870.5	Barley	mitochondrion	27.26	49.01
TraesCS3D01G373600.1	Wheat	mitochondrion	26.71	47.91
TraesCS3B01G413100.1	Wheat	cytosol, nucleus, plastid, vacuole	26.71	47.91
Os01t0869200-01	Rice	mitochondrion, plastid	27.4	47.85
EES01822	Sorghum	mitochondrion	27.12	47.83
CDX87352	Canola	cytosol, peroxisome, plasma membrane	26.58	47.32
CDX88569	Canola	cytosol, peroxisome, plasma membrane	26.58	47.32
Zm00001d003666_P001	Maize	mitochondrion	26.03	47.15
TraesCS3A01G380500.1	Wheat	mitochondrion	26.3	47.06
EES10822	Sorghum	mitochondrion	27.12	47.03
HORVU3Hr1G082880.2	Barley	cytosol, mitochondrion, peroxisome, vacuole	26.58	46.3
CDX81228	Canola	cytosol, mitochondrion, plastid	23.42	46.22
CDY64845	Canola	mitochondrion, peroxisome, plastid	22.88	45.63
CDY51292	Canola	cytosol, peroxisome, plastid	23.56	45.5
CDY56489	Canola	cytosol, peroxisome, plastid	23.56	45.5
KXG34188	Sorghum	plasma membrane	9.18	45.27
Zm00001d025416_P001	Maize	mitochondrion	24.52	44.97
CDY18706	Canola	cytosol, mitochondrion, plastid	23.56	44.79
CDX85800	Canola	cytosol	23.84	44.73
CDY64844	Canola	cytosol	23.84	44.73
Os04t0430900-00	Rice	cytosol, plastid	26.03	44.6
CDY22292	Canola	plastid	24.66	44.44
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	24.66	44.34
CDY35061	Canola	plastid	25.48	44.29
CDY46811	Canola	cytosol	22.47	43.73
CDY33361	Canola	plastid	24.66	43.06
CDY31314	Canola	cytosol	22.47	42.71
CDY51207	Canola	cytosol, nucleus, peroxisome	23.97	41.57
CDY36615	Canola	cytosol, nucleus, peroxisome	23.84	41.33
CDY02984	Canola	cytosol, peroxisome, plasma membrane	23.84	41.33
CDY39718	Canola	cytosol	19.32	37.3
CDY33715	Canola	cytosol	18.9	37.2
CDY65607	Canola	plastid	21.64	36.83
CDY49260	Canola	plastid	21.51	36.6
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	20.82	36.28
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	20.82	36.19
CDY26960	Canola	plastid	11.37	18.12
CDX92333	Canola	plastid	11.37	17.85

Protein Annotations

EnsemblPlants:CDY58861	EnsemblPlantsGene:GSBRNA2T00025260001	Gene3D:1.20.58.340	Gene3D:2.40.128.330	GO:A0A078J6M2	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR13890	PANTHER:PTHR13890:SF4	ProteinID:CDY58861	ProteinID:CDY58861.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE1B1B	UniProt:A0A078J6M2	MapMan:24.3.3.1	:

Description

BnaCnng33870DBnaCnng33870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6M2]

Coordinates

chrLK033706:+:38486..42806

Molecular Weight (calculated)

82887.6 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.985

Length

730 amino acids

Sequence
(BLAST)

001: MRGPRPEDFE TNPSTPITGQ PTPTYPAGAR KKGVGVRTWL VLCARGQAQT TEVGKHAIMR RTGLPARDLR ILDPLLSYPS TVLGRERAIV INLEHIKAII
101: TAQEVLLLNS KDPSVAPFID ELQRRILCHY RATKPKEEEN YEGETRMSMD QPQGGGDGTP LLFGEQGDEA KKDAKQSLEN QDGSKVLPFE FVALEACLEA
201: ASSSLESEAV RLELEAHPAL DKLTSKISTL NLERVRQIKS RLVAITGRVQ KVRDELEHLL DDDEDMAEMY LTEKLAQKLE NSLPAESASE SNRDESYLRA
301: NDDAHDLLMS THSALSRNSR GTHTSSTRSA MTNKFDVEEL EMLLEAYFVQ IDGTLNKLST LREYVDDTED YINIMLDDKQ NHLLQMGVML TTATLVMSAF
401: IAVAGVFGMN ITIELFKDEK AGPTRFAWTV IGGFIGSIFL YVGAIGNMSS RRESRDSDSK RDRSRFDRES SPKRSRRDGK PEEEGVRSKK GLDVSTETDK
501: KPRQSLRDAA PLEPDAQGLR KDFEKKHSET TKQAPHLSEE LRSRPYHQHD DRRTNGRDDR RQTSERGSWR GSRDQSNRRA GDDRRDQDKS TWRHDRFHES
601: DDTKGGALSR KRPAFREKKI PEESRIDSGR TRTEEANLNS RRQNERNWRS NNERPATGRD RVWNRDDGSR QSYRTDRDGF NRNGRTGLNG SWTRAEKKWD
701: HDLYEEANKS PARANEEEQI AKVEALLSSS

Best Arabidopsis Sequence Match ( AT3G19640.1 )
(BLAST)

001: MRGARPDEFN FSTNPSTPNT GQPTPTYPAG VGGGGGGRKK GVGVRTWLVL NSSGQSEPKE EGKHSIMRRT GLPARDLRIL DPLLSYPSTV LGRERAIVIN
101: LEHIKAIITA QEVLLLNSKD PSVSPFIDEL QRRILCHHHA TKPQEEQNSG GEPHTRVDPA QGEAGTEQSS GDQGSEAKKD AKQSLENQDG SKVLPFEFVA
201: LEACLEAASS SLEHEALRLE LEAHPALDKL TSKISTLNLE RVRQIKSRLV AITGRVQKVR DELEHLLDDD EDMAEMYLTE KLAQKLEDSS NSSMNESDTF
301: EVDLPQGDED DRLPPEFASE ANRDGRYLQA NDAHELLMST QSALSRNSRG THTSSTRSAM TNKLDVEELE MLLEAYFVQI DGILNKLSTL REYVDDTEDY
401: INIMLDDKQN HLLQMGVMLT TATLVMSAFI AVAGVFGMNI TIELFTDNKH GPSRFIWTVI GGSIGSICLY VGAIGWCKYK RLLE

Arabidopsis Description

MRS2-3MRS2-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VLJ7]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.