CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035144.1-P	Field mustard	cytosol, peroxisome, plasma membrane	97.8	97.8
CDX87352	Canola	cytosol, peroxisome, plasma membrane	97.56	97.56
CDY22292	Canola	plastid	85.85	86.91
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	85.85	86.7
AT1G80900.1	Thale cress	cytosol, nucleus, peroxisome, plastid	90.73	83.97
CDY35061	Canola	plastid	84.39	82.38
CDY33361	Canola	plastid	82.68	81.1
TraesCS7B01G414200.1	Wheat	endoplasmic reticulum, plasma membrane	68.29	80.46
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	68.29	80.46
PGSC0003DMT400073310	Potato	nucleus, peroxisome, plasma membrane, plastid	84.39	77.75
KRH23679	Soybean	plastid	83.17	76.98
KRH09638	Soybean	plastid	83.17	76.98
GSMUA_Achr9P13370_001	Banana	mitochondrion	80.0	76.81
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	83.17	76.8
Solyc06g068490.2.1	Tomato	plastid	84.39	75.05
GSMUA_Achr10P...	Banana	mitochondrion	78.05	74.94
HORVU2Hr1G086400.6	Barley	cytosol	53.41	72.52
Zm00001d000430_P001	Maize	plastid	75.12	71.96
Zm00001d036714_P002	Maize	plastid	74.63	71.16
Os06t0650800-01	Rice	plasma membrane	75.37	70.87
HORVU7Hr1G113400.9	Barley	plastid	74.88	69.61
TraesCS7A01G506600.1	Wheat	plastid	74.88	69.3
TraesCS7D01G494700.1	Wheat	plastid	75.12	69.21
TraesCS2A01G354100.1	Wheat	cytosol, peroxisome, plasma membrane	71.22	68.22
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	70.73	67.76
TraesCS2B01G375200.1	Wheat	cytosol, peroxisome, plasma membrane	70.49	67.52
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	70.49	65.53
Zm00001d003125_P001	Maize	cytosol, nucleus, plasma membrane, plastid	69.76	63.56
Os04t0501100-00	Rice	cytosol, plasma membrane	33.41	60.89
CDY51207	Canola	cytosol, nucleus, peroxisome	55.61	54.16
CDY36615	Canola	cytosol, nucleus, peroxisome	55.37	53.92
CDY02984	Canola	cytosol, peroxisome, plasma membrane	55.37	53.92
CDX81228	Canola	cytosol, mitochondrion, plastid	44.15	48.92
CDY64845	Canola	mitochondrion, peroxisome, plastid	43.66	48.91
CDY51292	Canola	cytosol, peroxisome, plastid	44.88	48.68
CDY56489	Canola	cytosol, peroxisome, plastid	44.63	48.41
CDY18706	Canola	cytosol, mitochondrion, plastid	43.9	46.88
CDY64844	Canola	cytosol	44.15	46.53
CDX85800	Canola	cytosol	44.15	46.53
CDY46811	Canola	cytosol	41.46	45.33
CDY31314	Canola	cytosol	41.22	44.01
CDY66275	Canola	cytosol, peroxisome, plasma membrane	47.32	43.99
CDX95430	Canola	cytosol, golgi, peroxisome	46.83	42.2
CDY42196	Canola	cytosol	46.34	41.67
CDY33715	Canola	cytosol	33.41	36.93
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	37.56	36.67
CDY65607	Canola	plastid	38.05	36.36
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	37.07	36.28
CDY39718	Canola	cytosol	33.41	36.24
CDY49260	Canola	plastid	37.56	35.9
CDY58861	Canola	nucleus	47.32	26.58
CDY26960	Canola	plastid	23.17	20.74
CDX92333	Canola	plastid	23.17	20.43

Protein Annotations

Gene3D:1.20.58.340	Gene3D:2.40.128.330	MapMan:24.3.3.1	GO:A0A078DJ44	EnsemblPlants:CDX88569	ProteinID:CDX88569
ProteinID:CDX88569.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00148132001
InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF10	SUPFAM:SSF144083	TMHMM:TMhelix
UniParc:UPI0004EDD20F	SEG:seg	:	:	:	:

Description

BnaC06g40130D

Coordinates

chrLK031855:+:1664108..1665491

Molecular Weight (calculated)

46457.1 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.066

Length

410 amino acids

Sequence
(BLAST)

001: MSDLKDRLLP PPLRGDSFSR PSSSGRQPLL GLDVSGLKKR GQGLKSWIRV DAFANTQVIE VDKFSMMRRC DLPARDLRLL DPLFVYPSTI LGRERAIVVN
101: LEQIRCIITA DEVLLLNSLD DYVLGYVVEL QQRLKASSVG DTSPDYLPFE FRALEVALEA ACTFLDAQAS ELEIEAYPLL DELTSKISTV NLERVRRLKS
201: RLVALTRRVQ KVRDEIEQLM DDDGDMAEMY LTEKKKRMEG SLYGDQSLPN DGVSFSAPVS PVSSPPSSRR LERSLSIARS RHDSAKSSES ENENIEELEM
301: LLEAYFVVID STLNKLTSLK EYIDDTEDFI NIQLDNVRNQ LIQFELLLTT ATFVVAIFGV VAGIFGMNFE IDLFEEPGVF KWVLTITGVC GVLVFLAFLW
401: FYKRRRLMPL

Best Arabidopsis Sequence Match ( AT1G80900.1 )
(BLAST)

001: MSELKERLLP PRPASAINLR GDAGSRPSPS GRQPLLGVDV LGLKKRGQGL KSWIRVDTSA NSQVIEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KASSVTEVWN QDSLELSRRR SRSLDNVLQN SSPDYLPFEF RALEVALEAA CTFLDSQASE
201: LEIEAYPLLD ELTSKISTLN LERARRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKKRMEGS LYGDQSLPVY RTNDCFSLSA PVSPVSSPPE
301: SRRLEKSLSI VRSRHDSARS SEDATENIEE LEMLLEAYFV VIDSTLNKLT SLKEYIDDTE DFINIQLDNV RNQLIQFELL LTTATFVVAI FGVVAGIFGM
401: NFEIDFFEKP GAFKWVLAIT GVCGLVVFLA FLWYYKRRRL MPL

Arabidopsis Description

MRS2-10Magnesium transporter MRS2-10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH0]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.