CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33361	Canola	plastid	97.14	97.61
Bra026085.1-P	Field mustard	plastid	100.0	94.38
AT1G16010.2	Thale cress	plastid	94.76	90.05
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	85.0	87.93
CDY22292	Canola	plastid	84.76	87.9
CDX88569	Canola	cytosol, peroxisome, plasma membrane	82.38	84.39
CDX87352	Canola	cytosol, peroxisome, plasma membrane	81.67	83.66
KRH09638	Soybean	plastid	85.71	81.26
KRH23679	Soybean	plastid	85.48	81.04
PGSC0003DMT400073310	Potato	nucleus, peroxisome, plasma membrane, plastid	85.24	80.45
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	65.71	79.31
TraesCS7B01G414200.1	Wheat	endoplasmic reticulum, plasma membrane	65.24	78.74
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	82.86	78.38
Solyc06g068490.2.1	Tomato	plastid	85.24	77.66
GSMUA_Achr9P13370_001	Banana	mitochondrion	76.19	74.94
GSMUA_Achr10P...	Banana	mitochondrion	74.52	73.3
Zm00001d000430_P001	Maize	plastid	72.14	70.79
Zm00001d036714_P002	Maize	plastid	72.14	70.47
HORVU2Hr1G086400.6	Barley	cytosol	50.48	70.2
Os06t0650800-01	Rice	plasma membrane	72.62	69.95
TraesCS7D01G494700.1	Wheat	plastid	73.33	69.21
HORVU7Hr1G113400.9	Barley	plastid	72.62	69.16
TraesCS7A01G506600.1	Wheat	plastid	72.62	68.85
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	68.33	67.06
TraesCS2A01G354100.1	Wheat	cytosol, peroxisome, plasma membrane	68.33	67.06
TraesCS2B01G375200.1	Wheat	cytosol, peroxisome, plasma membrane	68.1	66.82
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	67.14	63.95
Zm00001d003125_P001	Maize	cytosol, nucleus, plasma membrane, plastid	66.9	62.44
Os04t0501100-00	Rice	cytosol, plasma membrane	32.38	60.44
CDY36615	Canola	cytosol, nucleus, peroxisome	52.86	52.73
CDY51207	Canola	cytosol, nucleus, peroxisome	52.86	52.73
CDY02984	Canola	cytosol, peroxisome, plasma membrane	52.86	52.73
CDY51292	Canola	cytosol, peroxisome, plastid	42.14	46.83
CDX81228	Canola	cytosol, mitochondrion, plastid	41.19	46.76
CDY56489	Canola	cytosol, peroxisome, plastid	41.9	46.56
CDY64845	Canola	mitochondrion, peroxisome, plastid	40.24	46.17
CDY18706	Canola	cytosol, mitochondrion, plastid	41.19	45.05
CDX85800	Canola	cytosol	41.67	44.99
CDY64844	Canola	cytosol	41.67	44.99
CDY46811	Canola	cytosol	39.05	43.73
CDY31314	Canola	cytosol	38.81	42.45
CDY66275	Canola	cytosol, peroxisome, plasma membrane	44.05	41.95
CDX95430	Canola	cytosol, golgi, peroxisome	43.33	40.0
CDY42196	Canola	cytosol	42.86	39.47
CDY65607	Canola	plastid	36.67	35.9
CDY33715	Canola	cytosol	31.43	35.58
CDY49260	Canola	plastid	36.19	35.43
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	35.24	35.24
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	35.0	35.08
CDY39718	Canola	cytosol	31.43	34.92
CDY58861	Canola	nucleus	44.29	25.48
CDY26960	Canola	plastid	21.67	19.87
CDX92333	Canola	plastid	21.9	19.78

Protein Annotations

EnsemblPlants:CDY35061	EnsemblPlantsGene:GSBRNA2T00057931001	Gene3D:1.20.58.340	Gene3D:2.40.128.330	GO:A0A078HBG7	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR13890	PANTHER:PTHR13890:SF10	ProteinID:CDY35061
ProteinID:CDY35061.1	SEG:seg	SUPFAM:SSF144083	TMHMM:TMhelix	UniParc:UPI0004EDEE3D	UniProt:A0A078HBG7
MapMan:24.3.3.1	:	:	:	:	:

Description

BnaA06g10710DBnaA06g10710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBG7]

Coordinates

chrLK032346:-:65051..67387

Molecular Weight (calculated)

47441.3 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.064

Length

420 amino acids

Sequence
(BLAST)

001: MSELKERLLP PRPASALNLR DAAAASRSSA SGRTSLLGVD VLGLKKRGQG LRSWIRVDTS GNTQVMEVDK FTMMRRCDLP ARDLRLLDPL FVYPSTILGR
101: EKAIVVNLEQ IRCIITADEV LLLNSLDNYV LRYVVELQQR LKTSGVGEVW QQDNGQALEI ALEAACTFLD SQASELEIEA YPLLDELTSK ISTLNLERVR
201: RLKSRLVALT RRVQKVRDEI EQLMDDDGDM AEMYLTEKKK RMEGSLYGDH QSLLGYRSND GLSVSAPVSP VSSPPDSRSR LDRSVSIARS RHDSARSSEG
301: VTENIEELEM LLEAYFVVID STLNKLTSLK EYIDDTEDFI NIQLDNVRNQ LIQFELLLTT ATFVVAIFGV VAGIFGMNFE IDFFTQPGAF RWVLIITGIC
401: GFVIFSAFVW FFKYRRLMPL

Best Arabidopsis Sequence Match ( AT1G16010.2 )
(BLAST)

001: MSELKERLLP PRPASAMNLR DASVTRPSAS GRPPLLGVDV LGLKKRGQGL RSWIRVDTSG NTQVMEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KTSSVGEMWQ QENSQLSRRR SRSFDNAFEN SSPDYLPFEF RALEIALEAA CTFLDSQASE
201: LEIEAYPLLD ELTSKISTLN LERVRRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKRRMEGS MYGDQSLLGY RSNDGLSVSA PVSPVSSPPD
301: SRRLDKSLSI ARSRHDSARS SEGAENIEEL EMLLEAYFVV IDSTLNKLTS LKEYIDDTED FINIQLDNVR NQLIQFELLL TTATFVVAIF GVVAGIFGMN
401: FEIDFFNQPG AFRWVLIITG VCGFVIFSAF VWFFKYRRLM PL

Arabidopsis Description

MRS2-1Magnesium transporter MRS2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.