CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39718	Canola	cytosol	94.07	92.33
Bra032683.1-P	Field mustard	plastid	74.66	80.76
CDY49260	Canola	plastid	59.57	51.52
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	57.68	51.07
CDY65607	Canola	plastid	58.76	50.82
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	57.41	50.71
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	48.79	47.76
PGSC0003DMT400064171	Potato	nucleus	53.1	45.6
Solyc01g103890.2.1	Tomato	nucleus	53.1	45.6
VIT_12s0034g02550.t01	Wine grape	plastid	55.53	45.47
AT4G28580.1	Thale cress	mitochondrion, plastid	49.6	45.1
KRH43038	Soybean	plastid	52.29	43.11
KRH59146	Soybean	plastid	52.02	42.79
CDX81228	Canola	cytosol, mitochondrion, plastid	39.89	40.0
CDY56489	Canola	cytosol, peroxisome, plastid	39.89	39.15
CDY51292	Canola	cytosol, peroxisome, plastid	39.89	39.15
CDY18706	Canola	cytosol, mitochondrion, plastid	39.89	38.54
TraesCS1D01G208700.1	Wheat	mitochondrion	47.98	38.28
TraesCS1B01G219000.1	Wheat	mitochondrion	48.25	38.25
Zm00001d029808_P001	Maize	mitochondrion, plastid	49.06	38.24
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	49.06	38.0
TraesCS1A01G205400.1	Wheat	mitochondrion	47.44	37.93
EER91996	Sorghum	mitochondrion	48.25	37.45
CDY64845	Canola	mitochondrion, peroxisome, plastid	36.39	36.89
CDY64844	Canola	cytosol	38.54	36.76
Zm00001d047388_P001	Maize	mitochondrion, plastid	46.9	36.55
CDY46811	Canola	cytosol	36.93	36.53
CDX85800	Canola	cytosol	38.27	36.5
CDY31314	Canola	cytosol	36.93	35.68
Os03t0137700-01	Rice	plastid	40.7	34.71
OQU93276	Sorghum	plastid	40.16	34.49
CDX88569	Canola	cytosol, peroxisome, plasma membrane	36.93	33.41
CDX87352	Canola	cytosol, peroxisome, plasma membrane	36.66	33.17
Zm00001d027582_P001	Maize	plastid	39.08	33.1
CDY66275	Canola	cytosol, peroxisome, plasma membrane	37.74	31.75
CDY35061	Canola	plastid	35.58	31.43
CDY22292	Canola	plastid	33.96	31.11
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	33.96	31.03
CDY33361	Canola	plastid	34.77	30.86
CDY36615	Canola	cytosol, nucleus, peroxisome	34.77	30.64
CDY51207	Canola	cytosol, nucleus, peroxisome	34.77	30.64
CDY02984	Canola	cytosol, peroxisome, plasma membrane	34.5	30.4
CDX95430	Canola	cytosol, golgi, peroxisome	35.85	29.23
CDY42196	Canola	cytosol	35.58	28.95
CDY58861	Canola	nucleus	37.2	18.9
CDY26960	Canola	plastid	19.14	15.5
CDX92333	Canola	plastid	19.14	15.27

Protein Annotations

EnsemblPlants:CDY33715	EnsemblPlantsGene:GSBRNA2T00055120001	Gene3D:1.20.58.340	Gene3D:2.40.128.330	GO:A0A078H526	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR13890	PANTHER:PTHR13890:SF2	ProteinID:CDY33715
ProteinID:CDY33715.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF4BEF	UniProt:A0A078H526	MapMan:24.3.3.1

Description

BnaC04g29360DBnaC04g29360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H526]

Coordinates

chrLK032320:+:411987..413194

Molecular Weight (calculated)

42161.3 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.164

Length

371 amino acids

Sequence
(BLAST)

001: MSNQSYLSIC HQNKDGAVKN DTETSMPSAP IPINAGGREG NGKKKTRRAM PWMRFSRNGN TEVIECDTRT IMKRVSIPAR DLRIRGPLFS SSSNILGREK
101: SIIVNLENIK AIVTANEVLL LDPLRPQVLS LIDQLKKQFP QRNVPEDIQS SQEAEEGIQS ELPFEFQVLE SAFEVVCSFF DTRVTSLETE ALPVLAELIE
201: KVTRENLRIV RSLKSNLTCL IASVQKVKDE IEHLLDDDKD MAEFYLTRKV IQSQQEDVED LEMLLEAYLI QVEGTRNKLH TMRKYIDDTE DYVKIKQKDK
301: RNRLLVFKLV ISRASFAISS GTLVVSLFGM NIPIPLYNTN GVFGYLVLGV FVMCIVLFMF TFGKAGWEKL L

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.