CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027582_P001	Maize	plastid	85.65	84.47
Os03t0137700-01	Rice	plastid	57.41	57.01
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	46.76	53.3
EER91996	Sorghum	mitochondrion	55.09	49.79
PGSC0003DMT400064171	Potato	nucleus	48.61	48.61
Solyc01g103890.2.1	Tomato	nucleus	48.38	48.38
Bra007423.1-P	Field mustard	plastid	47.22	47.55
CDY65607	Canola	plastid	47.22	47.55
CDY49260	Canola	plastid	46.99	47.32
VIT_12s0034g02550.t01	Wine grape	plastid	48.61	46.36
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	44.91	46.3
Bra022373.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.68	45.95
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	44.68	45.95
AT3G58970.1	Thale cress	mitochondrion, plastid	46.06	45.64
KRH43038	Soybean	plastid	47.45	45.56
KRH59146	Soybean	plastid	47.22	45.23
CDY33715	Canola	cytosol	34.49	40.16
CDY39718	Canola	cytosol	34.49	39.42
EER90897	Sorghum	cytosol	34.26	38.24
AT4G28580.1	Thale cress	mitochondrion, plastid	35.88	37.99
Bra032683.1-P	Field mustard	plastid	29.86	37.61
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	26.85	33.33
KXG25477	Sorghum	plastid	25.69	30.92
EES10822	Sorghum	mitochondrion	28.47	29.22
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	28.7	28.12
EES01822	Sorghum	mitochondrion	26.85	28.02
EES04071	Sorghum	mitochondrion	28.24	27.54
OQU81611	Sorghum	peroxisome, plasma membrane, plastid	7.87	26.77
KXG34188	Sorghum	plasma membrane	8.33	24.32
OQU91190	Sorghum	plastid	16.67	15.55

Protein Annotations

EnsemblPlants:OQU93276	EnsemblPlantsGene:SORBI_3001G512100	EntrezGene:8057400	Gene3D:2.40.128.330	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR13890	PANTHER:PTHR13890:SF2	ProteinID:OQU93276	ProteinID:OQU93276.1	RefSeq:XP_002465900.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A82C35	UniProt:A0A1Z5SBT1	MapMan:24.3.3.1	:

Description

hypothetical protein

Coordinates

chr1:+:78001611..78004021

Molecular Weight (calculated)

48305.8 Da

IEP (calculated)

9.618

GRAVY (calculated)

-0.015

Length

432 amino acids

Sequence
(BLAST)

001: MVMLSGIGSR KPPPFLSSSS SSYSKRSRAA RRLPSLPRPP VAPPAPHPAA RWRRRKAPAR LWMRMDRWGR CEVFMSDRAF VAERSGVHAR DLRVVGPLLS
101: RCPSILAREK AMVINLEFIR AIVTADEVLL LEPLAQEVIP FIDKLRRHFP LKSVEVDVGA TQVGNVDGKH AKTGAECGLP FEFQVLELAL EAVCLSFHSS
201: LSDLNKHAIF VLDELTENVS TRNLERVRSL KRNLTSLLAG VHKVRDEVEH LLDHNENRAQ LHLSRKQIKS PQDEALLVSS ALNCNFPSKT NLDIRNSVIN
301: QGTGIAVVAP LDDTVGDLEM LLESYFMQLD GIRNRITMVR GYIVDTEDYI NIQLDNLRNG LIQLHLILII VSFGISTNTL IAASFAINMP NNGDYKKFVG
401: DFWQFVGGTS SFCLLVIVVL LGYAWRNRLL GS

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.