CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	96.18	95.95
CDY65607	Canola	plastid	79.47	77.62
CDY49260	Canola	plastid	79.24	77.39
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	58.47	64.64
VIT_12s0034g02550.t01	Wine grape	plastid	69.45	64.24
KRH59146	Soybean	plastid	67.06	62.31
Solyc01g103890.2.1	Tomato	nucleus	63.72	61.81
PGSC0003DMT400064171	Potato	nucleus	63.48	61.57
KRH43038	Soybean	plastid	65.87	61.33
CDY33715	Canola	cytosol	51.07	57.68
CDY39718	Canola	cytosol	51.79	57.41
TraesCS1B01G219000.1	Wheat	mitochondrion	61.81	55.34
TraesCS1D01G208700.1	Wheat	mitochondrion	61.34	55.27
TraesCS1A01G205400.1	Wheat	mitochondrion	60.86	54.96
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	62.05	54.28
Zm00001d047388_P001	Maize	mitochondrion, plastid	61.1	53.78
Zm00001d029808_P001	Maize	mitochondrion, plastid	61.1	53.78
EER91996	Sorghum	mitochondrion	61.1	53.56
CDX81228	Canola	cytosol, mitochondrion, plastid	40.57	45.95
CDY64845	Canola	mitochondrion, peroxisome, plastid	39.86	45.63
CDY56489	Canola	cytosol, peroxisome, plastid	40.57	44.97
OQU93276	Sorghum	plastid	46.3	44.91
Os03t0137700-01	Rice	plastid	46.54	44.83
CDY51292	Canola	cytosol, peroxisome, plastid	40.33	44.71
CDY18706	Canola	cytosol, mitochondrion, plastid	40.81	44.53
CDY64844	Canola	cytosol	41.05	44.22
Zm00001d027582_P001	Maize	plastid	46.06	44.06
CDX85800	Canola	cytosol	40.81	43.96
CDY46811	Canola	cytosol	37.23	41.6
CDY31314	Canola	cytosol	37.23	40.62
CDX88569	Canola	cytosol, peroxisome, plasma membrane	36.28	37.07
CDX87352	Canola	cytosol, peroxisome, plasma membrane	35.8	36.59
CDY66275	Canola	cytosol, peroxisome, plasma membrane	36.99	35.15
CDY35061	Canola	plastid	35.08	35.0
CDY36615	Canola	cytosol, nucleus, peroxisome	35.08	34.92
CDY02984	Canola	cytosol, peroxisome, plasma membrane	35.08	34.92
CDY51207	Canola	cytosol, nucleus, peroxisome	34.84	34.68
CDY22292	Canola	plastid	33.41	34.57
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	33.41	34.48
CDY33361	Canola	plastid	33.65	33.73
CDX95430	Canola	cytosol, golgi, peroxisome	34.61	31.87
CDY42196	Canola	cytosol	34.13	31.36
CDY58861	Canola	nucleus	36.28	20.82
CDY26960	Canola	plastid	18.85	17.25
CDX92333	Canola	plastid	18.85	16.99

Protein Annotations

Gene3D:2.40.128.330	MapMan:24.3.3.1	GO:A0A078EB18	EnsemblPlants:CDX99295	ProteinID:CDX99295	ProteinID:CDX99295.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00107567001	InterPro:MgTranspt_CorA/ZnTranspt_ZntB
PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF2	SUPFAM:SSF144083	TMHMM:TMhelix	UniParc:UPI0004EEA451
SEG:seg	:	:	:	:	:

Description

BnaC05g34100D

Coordinates

chrLK031909:-:955496..957166

Molecular Weight (calculated)

47027.8 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.089

Length

419 amino acids

Sequence
(BLAST)

001: MGEGKLSFRR LSSIRHRKKR TAAKDEAESS LISSSPPPTP MTPAAVVAKA KKKAGGARLW MRFDRTGAME VVECDKSTII KRASVPPRDL RILGPVFSHS
101: SNILAREKAI VVNLEVIKLI VTAEEVLLLD PLRPEVLPFV ERLKLQFPQI TNASGNVVQS SSLLDQEAGE GLQSELPFEF QVLEIALEVV CSLLDTSVDA
201: LETEAWPVLD ELTKNVSTEN LEYVRSLKSN LTRLLARVQK VRDEIEHLLD DNEDMADLYL TRKWIQQNQQ SEAELGETAS NLLSRATSNR SSSMVTSTTK
301: GDDVEDLEML LEAYFMQLEG MRNRIFTVRE YIDDTEDYVN IQLDNQRNEM IQLQLTLTIA SFAITANTLL VSLFGMNIPC PLYKMDDVFG YFLSSVTAVC
401: VVLFLLTLGY AWWKKLLGS

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.