Factsheet for PGSC0003DMT400064171

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103890.2.1	Tomato	nucleus	97.45	97.45
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	62.96	71.77
VIT_12s0034g02550.t01	Wine grape	plastid	75.0	71.52
KRH59146	Soybean	plastid	71.53	68.51
KRH43038	Soybean	plastid	70.83	68.0
CDY49260	Canola	plastid	64.58	65.03
Bra007423.1-P	Field mustard	plastid	64.35	64.8
CDY65607	Canola	plastid	64.35	64.8
AT3G58970.1	Thale cress	mitochondrion, plastid	65.05	64.45
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	62.04	63.81
Bra022373.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.04	63.81
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	61.57	63.48
TraesCS1D01G208700.1	Wheat	mitochondrion	65.05	60.43
TraesCS1A01G205400.1	Wheat	mitochondrion	64.58	60.13
TraesCS1B01G219000.1	Wheat	mitochondrion	65.05	60.04
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	64.58	58.25
Zm00001d029808_P001	Maize	mitochondrion, plastid	64.12	58.19
EER91996	Sorghum	mitochondrion	64.12	57.95
Zm00001d047388_P001	Maize	mitochondrion, plastid	63.43	57.56
CDY33715	Canola	cytosol	45.6	53.1
CDY39718	Canola	cytosol	46.06	52.65
AT4G28580.1	Thale cress	mitochondrion, plastid	47.92	50.74
Bra032683.1-P	Field mustard	plastid	39.81	50.15
Zm00001d027582_P001	Maize	plastid	49.54	48.86
OQU93276	Sorghum	plastid	48.61	48.61
PGSC0003DMT400038974	Potato	cytosol	15.97	47.26
Os03t0137700-01	Rice	plastid	46.76	46.44
PGSC0003DMT400038981	Potato	mitochondrion	40.05	45.89
PGSC0003DMT400073310	Potato	nucleus, peroxisome, plasma membrane, plastid	38.43	37.3
PGSC0003DMT400066130	Potato	cytosol, peroxisome, plastid	36.57	31.73
PGSC0003DMT400072765	Potato	cytosol, peroxisome, plasma membrane	13.19	28.79
PGSC0003DMT400001226	Potato	mitochondrion	15.05	16.58

Protein Annotations

EntrezGene:102599491	Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	GO:GO:0055085	UniProt:M1CBU7	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	EnsemblPlantsGene:PGSC0003DMG402024930
PGSC:PGSC0003DMG402024930	EnsemblPlants:PGSC0003DMT400064171	PANTHER:PTHR13890	PANTHER:PTHR13890:SF2	SUPFAM:SSF144083	TMHMM:TMhelix
UniParc:UPI000296FABD	RefSeq:XP_006349352.1	SEG:seg	:	:	:

Description

RNA splicing protein mrs2, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG402024930]

Coordinates

chr1:-:80538197..80543758

Molecular Weight (calculated)

49067.4 Da

IEP (calculated)

5.526

GRAVY (calculated)

-0.180

Length

432 amino acids

Sequence
(BLAST)

001: MGKNQFSIRR RKKGMPPLPT PPVDNGEPQN SISMPVGTAK PSKKKVGGAR LWMRFDRWGQ SELNEWDKNA IIKRAGIPTR DLRILGPIFS HSSSILAREK
101: AMVVNLEFIR AIITAEEVLL LDPLRQEVLP FVDQLRQQLP HKSLLKVNGT CAEQDDNEGH FPNAGHWLPV PEAVEGLQAE LPFEFQVLEI ALEVVCTFLD
201: SSVADLERDA YPVLDELAMN VSTKNLEQVR SLKSNLTRLL ARVQKVRDEI EHLLDDNEDM AQLYLTRKWI QNQQPETLLG TIVSNSSVPA APNLRRLNSA
301: RSRSGSLVSN HFNYYDVEDL EMLLEAYFMQ LEGTRNKILS VREYIDDTED YVNIQLDNQR NELIQLQLTL TIASFAIAME TLIAGWFGMN IPCTLNHTEG
401: LFWPFVLCLT IGCIMLFLVI LGYARWKKLL GS

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.