CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49260	Canola	plastid	98.6	98.6
AT3G58970.1	Thale cress	mitochondrion, plastid	88.58	87.16
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	78.32	80.0
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	77.62	79.47
VIT_12s0034g02550.t01	Wine grape	plastid	71.79	67.99
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	57.81	65.44
Solyc01g103890.2.1	Tomato	nucleus	64.8	64.35
PGSC0003DMT400064171	Potato	nucleus	64.8	64.35
KRH59146	Soybean	plastid	67.13	63.86
KRH43038	Soybean	plastid	66.2	63.11
CDY33715	Canola	cytosol	50.82	58.76
CDY39718	Canola	cytosol	51.05	57.94
TraesCS1B01G219000.1	Wheat	mitochondrion	61.54	56.41
TraesCS1D01G208700.1	Wheat	mitochondrion	60.61	55.91
TraesCS1A01G205400.1	Wheat	mitochondrion	59.91	55.39
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	61.07	54.7
Zm00001d047388_P001	Maize	mitochondrion, plastid	60.37	54.41
Zm00001d029808_P001	Maize	mitochondrion, plastid	59.91	53.99
EER91996	Sorghum	mitochondrion	60.14	53.97
OQU93276	Sorghum	plastid	47.55	47.22
CDX81228	Canola	cytosol, mitochondrion, plastid	40.56	47.03
CDY64845	Canola	mitochondrion, peroxisome, plastid	39.63	46.45
Zm00001d027582_P001	Maize	plastid	47.09	46.12
CDY51292	Canola	cytosol, peroxisome, plastid	40.33	45.77
CDY56489	Canola	cytosol, peroxisome, plastid	40.33	45.77
CDY64844	Canola	cytosol	41.49	45.76
CDY18706	Canola	cytosol, mitochondrion, plastid	40.56	45.31
CDX85800	Canola	cytosol	41.03	45.24
Os03t0137700-01	Rice	plastid	44.76	44.14
CDY46811	Canola	cytosol	37.76	43.2
CDY31314	Canola	cytosol	37.53	41.93
CDX88569	Canola	cytosol, peroxisome, plasma membrane	36.36	38.05
CDX87352	Canola	cytosol, peroxisome, plasma membrane	35.9	37.56
CDY35061	Canola	plastid	35.9	36.67
CDY66275	Canola	cytosol, peroxisome, plasma membrane	37.3	36.28
CDY33361	Canola	plastid	34.73	35.65
CDY22292	Canola	plastid	33.57	35.56
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	33.57	35.47
CDY36615	Canola	cytosol, nucleus, peroxisome	34.5	35.15
CDY02984	Canola	cytosol, peroxisome, plasma membrane	34.5	35.15
CDY51207	Canola	cytosol, nucleus, peroxisome	34.27	34.92
CDX95430	Canola	cytosol, golgi, peroxisome	34.27	32.31
CDY42196	Canola	cytosol	34.03	32.02
CDY58861	Canola	nucleus	36.83	21.64
CDY26960	Canola	plastid	18.41	17.25
CDX92333	Canola	plastid	18.65	17.2

Protein Annotations

Gene3D:1.20.58.340	Gene3D:2.40.128.330	MapMan:24.3.3.1	GO:A0A078JJS6	UniProt:A0A078JJS6	EnsemblPlants:CDY65607
ProteinID:CDY65607	ProteinID:CDY65607.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00046907001	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF2
SUPFAM:SSF144083	TMHMM:TMhelix	UniParc:UPI0004EBC868	SEG:seg	:	:

Description

BnaCnng47920DBnaCnng47920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJS6]

Coordinates

chrLK034858:-:6283..8060

Molecular Weight (calculated)

48077.8 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.163

Length

429 amino acids

Sequence
(BLAST)

001: MGKGPLSFRR LSSIRRRKKG SSVKDDPNQS SNPSSPPPPS PINAGGSVAA GTTGKAKKKA GGARLWMRFD RTGAMEVVEC DKSTIIKRSS VPARDLRILG
101: PVFSHSSNIL AREKAIVVNL EVIKAIVTAE EVLLLDPLRP EVLPFIDRLK QQFPQTNALE ATPNVQSFDP EAGEGLQSEL PFEFQVLEMA LEVVCSIVDT
201: SVASLETDAW PVLDELTKNV STENLEYVRS LKSNLTRLLA RVQKVRDELE HLLDDNEDMA DLYLTRKWNQ NQQAEALLEG TVSVAPPHNS SNLYRLTSNR
301: SASMVTSNMD EDDVEDLEML LEAYFMQLDG MRNKILTVRE YIDDTEDYVN IQLDNQRNQL IQLQLILTMA SFAITAETLL ASLFGMNIPC PLYNIHGIFW
401: YFVWSITAFC FVLFMVVLGY ARWKKLLGS

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.