Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02984 | Canola | cytosol, peroxisome, plasma membrane | 99.76 | 99.76 |
| Bra025121.1-P | Field mustard | cytosol, nucleus, peroxisome | 99.29 | 99.29 |
| CDY51207 | Canola | cytosol, nucleus, peroxisome | 99.05 | 99.05 |
| AT2G03620.2 | Thale cress | cytosol, nucleus, peroxisome | 92.87 | 92.87 |
| Solyc05g012220.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 65.8 | 66.75 |
| VIT_01s0011g00450.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 66.51 | 66.51 |
| PGSC0003DMT400072765 | Potato | cytosol, peroxisome, plasma membrane | 30.64 | 65.15 |
| KRH70907 | Soybean | cytosol, nucleus, plasma membrane | 63.66 | 64.73 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plasma membrane | 58.43 | 59.42 |
| CDX88569 | Canola | cytosol, peroxisome, plasma membrane | 53.92 | 55.37 |
| CDX87352 | Canola | cytosol, peroxisome, plasma membrane | 53.68 | 55.12 |
| CDY35061 | Canola | plastid | 52.73 | 52.86 |
| CDY33361 | Canola | plastid | 51.78 | 52.15 |
| CDY22292 | Canola | plastid | 50.12 | 52.1 |
| CDY49735 | Canola | mitochondrion, peroxisome, plasma membrane, plastid | 50.12 | 51.97 |
| CDX81228 | Canola | cytosol, mitochondrion, plastid | 38.24 | 43.51 |
| CDY56489 | Canola | cytosol, peroxisome, plastid | 38.72 | 43.12 |
| CDY51292 | Canola | cytosol, peroxisome, plastid | 38.72 | 43.12 |
| CDY64845 | Canola | mitochondrion, peroxisome, plastid | 36.82 | 42.35 |
| CDY18706 | Canola | cytosol, mitochondrion, plastid | 38.24 | 41.93 |
| CDY64844 | Canola | cytosol | 38.0 | 41.13 |
| CDX85800 | Canola | cytosol | 37.77 | 40.87 |
| CDY46811 | Canola | cytosol | 35.87 | 40.27 |
| CDY31314 | Canola | cytosol | 36.34 | 39.84 |
| CDY66275 | Canola | cytosol, peroxisome, plasma membrane | 41.33 | 39.46 |
| CDX95430 | Canola | cytosol, golgi, peroxisome | 40.38 | 37.36 |
| CDY42196 | Canola | cytosol | 39.91 | 36.84 |
| CDX99295 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.92 | 35.08 |
| CDY33715 | Canola | cytosol | 30.64 | 34.77 |
| CDX92290 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.68 | 34.76 |
| CDY65607 | Canola | plastid | 35.15 | 34.5 |
| CDY39718 | Canola | cytosol | 30.88 | 34.39 |
| CDY49260 | Canola | plastid | 34.92 | 34.27 |
| CDY58861 | Canola | nucleus | 41.33 | 23.84 |
| CDY26960 | Canola | plastid | 19.71 | 18.12 |
| CDX92333 | Canola | plastid | 19.95 | 18.06 |
Protein Annotations
| EnsemblPlants:CDY36615 | EnsemblPlantsGene:GSBRNA2T00062326001 | Gene3D:1.20.58.340 | Gene3D:2.40.128.330 | GO:A0A078HE36 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR13890 | PANTHER:PTHR13890:SF11 | ProteinID:CDY36615 | ProteinID:CDY36615.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EECE4E | UniProt:A0A078HE36 | MapMan:24.3.3.1 | : |
Description
BnaC06g06680DBnaC06g06680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE36]
Coordinates
chrLK032379:-:165575..167992
Molecular Weight (calculated)
46946.5 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.064
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEQPDPFSA STLPDFISSQ KIGRPVTLEG QSNRGHPYSG LKKRGQSSRS WVKIDENGNS TVLELDKATI MKRCSLPSRD LRLLDPLFIY PSSILGRERA
101: IVVSLEKIRC IITAEEVILM NARDASVVQY QSELCKRLQS NQNLNLKDDL PFEFKALELV LELSCLSLDA QVNELEMEVY PVLDELASNI STLNLEHVRR
201: LKGRLLALTQ KVQKVCDEIE HLMDDDDDMA EMYLTEKKER SEAHASVELE DNLDDDFGSS GIVSKSAPVS PVGSTSGNLG KLQRAFSSVV GSHRSLLSSF
301: STGENIDQLE MLLEAYFVVV DNTLSKLSSL KEYIDDTEDL INIKLGNVQN QLIQFQLLLT AATFVAAIFA AVTAVFGMNL QDSVFKDPTM FQWVLLVTGI
401: GCGLLYFGFV LYFKHKKVFP L
101: IVVSLEKIRC IITAEEVILM NARDASVVQY QSELCKRLQS NQNLNLKDDL PFEFKALELV LELSCLSLDA QVNELEMEVY PVLDELASNI STLNLEHVRR
201: LKGRLLALTQ KVQKVCDEIE HLMDDDDDMA EMYLTEKKER SEAHASVELE DNLDDDFGSS GIVSKSAPVS PVGSTSGNLG KLQRAFSSVV GSHRSLLSSF
301: STGENIDQLE MLLEAYFVVV DNTLSKLSSL KEYIDDTEDL INIKLGNVQN QLIQFQLLLT AATFVAAIFA AVTAVFGMNL QDSVFKDPTM FQWVLLVTGI
401: GCGLLYFGFV LYFKHKKVFP L
001: MGEQLDPFSA SNLPDFISSQ KIGRPVNFEG QTNRGHPFSG LKKRGQSSRS WVKIDQDGNS AVLELDKATI MKRCSLPSRD LRLLDPLFIY PSSILGRERA
101: IVVSLEKIRC IITAEEVILM NARDASVVQY QSELCKRLQS NHNLNVKDDL PFEFKALELV LELSCLSLDA QVNELEMEVY PVLDELATNI STLNLEHVRR
201: LKGRLLTLTQ KVQKVCDEIE HLMDDDDDMA EMYLTEKKER AEAHASEELE DNIGEDFESS GIVSKSAPVS PVGSTSGNFG KLQRAFSSIV GSHKSLLSSS
301: SIGENIDQLE MLLEAYFVVV DNTLSKLSSL KEYIDDTEDL INIKLGNVQN QLIQFQLLLT AATFVAAIFA AVTAVFGMNL QDSVFQNPTT FQYVLLITGI
401: GCGFLYFGFV LYFKHKKVFP L
101: IVVSLEKIRC IITAEEVILM NARDASVVQY QSELCKRLQS NHNLNVKDDL PFEFKALELV LELSCLSLDA QVNELEMEVY PVLDELATNI STLNLEHVRR
201: LKGRLLTLTQ KVQKVCDEIE HLMDDDDDMA EMYLTEKKER AEAHASEELE DNIGEDFESS GIVSKSAPVS PVGSTSGNFG KLQRAFSSIV GSHKSLLSSS
301: SIGENIDQLE MLLEAYFVVV DNTLSKLSSL KEYIDDTEDL INIKLGNVQN QLIQFQLLLT AATFVAAIFA AVTAVFGMNL QDSVFQNPTT FQYVLLITGI
401: GCGFLYFGFV LYFKHKKVFP L
Arabidopsis Description
MRS2-5Magnesium transporter MRS2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.