CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002432.1-P	Field mustard	plastid	98.25	96.36
CDX92333	Canola	plastid	97.82	96.34
AT5G22830.1	Thale cress	plastid	87.99	87.8
GSMUA_Achr7P01670_001	Banana	cytosol	24.02	73.83
VIT_06s0061g01060.t01	Wine grape	plastid	67.69	69.51
KRH26555	Soybean	plastid	67.03	67.18
Solyc11g066660.1.1	Tomato	plastid	65.5	67.11
KRH22756	Soybean	mitochondrion, plastid	66.81	67.11
HORVU4Hr1G004120.2	Barley	plastid	62.66	66.28
TraesCS4B01G027800.1	Wheat	plastid	62.66	64.06
TraesCS4A01G286400.1	Wheat	plastid	62.66	64.06
TraesCS4D01G025300.1	Wheat	plastid	62.45	63.98
PGSC0003DMT400001226	Potato	mitochondrion	52.84	61.73
OQU91190	Sorghum	plastid	61.79	61.12
Os03t0684400-01	Rice	plastid	62.88	60.76
GSMUA_Achr8P03230_001	Banana	mitochondrion	63.76	58.99
Zm00001d033527_P001	Maize	plastid	60.7	54.94
GSMUA_Achr7P01660_001	Banana	plastid	32.31	49.33
CDX81228	Canola	cytosol, mitochondrion, plastid	19.65	24.32
CDY56489	Canola	cytosol, peroxisome, plastid	19.87	24.07
CDY46811	Canola	cytosol	19.65	24.0
CDY51292	Canola	cytosol, peroxisome, plastid	19.65	23.81
CDY64845	Canola	mitochondrion, peroxisome, plastid	19.0	23.77
CDY31314	Canola	cytosol	19.87	23.7
CDY18706	Canola	cytosol, mitochondrion, plastid	19.65	23.44
CDX87352	Canola	cytosol, peroxisome, plasma membrane	20.74	23.17
CDX88569	Canola	cytosol, peroxisome, plasma membrane	20.74	23.17
CDX85800	Canola	cytosol	18.78	22.11
CDY35061	Canola	plastid	19.87	21.67
CDY64844	Canola	cytosol	18.34	21.59
CDY22292	Canola	plastid	19.0	21.48
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	19.0	21.43
CDY33361	Canola	plastid	19.21	21.05
CDY36615	Canola	cytosol, nucleus, peroxisome	18.12	19.71
CDY02984	Canola	cytosol, peroxisome, plasma membrane	18.12	19.71
CDY51207	Canola	cytosol, nucleus, peroxisome	18.12	19.71
CDY33715	Canola	cytosol	15.5	19.14
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	17.47	19.05
CDY49260	Canola	plastid	17.69	18.88
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	17.25	18.85
CDY39718	Canola	cytosol	15.28	18.52
CDY65607	Canola	plastid	17.25	18.41
CDY66275	Canola	cytosol, peroxisome, plasma membrane	17.47	18.14
CDY42196	Canola	cytosol	17.69	17.76
CDX95430	Canola	cytosol, golgi, peroxisome	17.47	17.58
CDY58861	Canola	nucleus	18.12	11.37

Protein Annotations

EnsemblPlants:CDY26960	EnsemblPlantsGene:GSBRNA2T00036714001	Gene3D:1.20.58.340	Gene3D:2.40.128.330	GO:A0A078GK76	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR13890	PANTHER:PTHR13890:SF25	ProteinID:CDY26960
ProteinID:CDY26960.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EED3F3	UniProt:A0A078GK76	MapMan:24.3.3.1

Description

BnaC09g36230DBnaC09g36230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK76]

Coordinates

chrLK032197:+:335807..339365

Molecular Weight (calculated)

50843.4 Da

IEP (calculated)

5.982

GRAVY (calculated)

-0.136

Length

458 amino acids

Sequence
(BLAST)

001: MALTPTPSTL TSRVNISSDH HPSSLHFLLP PPGSLSSPPS SFSLHLSALN RSMICFETLK VLSRSKCLAK SPTTAEDFVG DYDSLNVSGD DDDDDGSVSG
101: GGGKKIDSSS STVSSSSDST SLGIREPVYE VVEVKATGTI STRKISRRQL LKSSGLRPRD IRSVDPSLFM TNSMPSLLVR EHAILLNLGS LRAIAMRDRV
201: LIFDYNRRGG RAFVDTLMPR INPRSMNGGP SMPFELEVVE SALISRIQRL EQRLMDIEPR VQVLLEVLPN RLTADILEEL RISKQRLVEL GSRAGALRQM
301: LLDLLEDPHE IRRICIMGRN CTLRRGNDDV ECSLPLDKQI AEEEEEEIEM LLENYLQRCE SCHGQAERLL DSAKEMEDSI AVNLSSRRLE VSRFELLLQV
401: GTFCVAAGAL VAGIFGMNLK SYLEEQPFAF WLTTGGIILG AAVGFFLMYS YLRKRKIF

Best Arabidopsis Sequence Match ( AT5G22830.2 )
(BLAST)

001: MALTPIPSTF TSLFNFSDHS PYPSPSLHYL LPGSSPSFSL QLSALSRTPI YFEALKVLSR SKCFAKSPTT AEDFVGDYES LNVSDDDDGS DSNSSDGDNG
101: GGRDDSKKID SSSSSSSSDS TSLGIREPVY EVVEVKATGA ISTRKINRRQ LLKSSGLRPR DIRSVDPSLF MTNSVPSLLV REHAILLNLG SLRAIAMRDR
201: VLIFDYNRRG GRAFVDTLMP RLNPRSMNGG PSMPFELEAV ESALISRIQR LEQRLMDIEP RVQALLEVLP NRLTADILEE LRISKQRLVE LGSRAGALRQ
301: MLLDLLEDPH EIRRICIMGR NCTLRRGDDD LECTLPSDKL IAEEEEEEIE MLLENYLQRC ESCHGQAERL LDSAKEMEDS IAVNLSSRRL EVSRFELLLQ
401: VGTFCVAVGA LIAGIFGMNL RSYLEEQASA FWLTTGGIII GAAVAFFLMY SYLSRRKIF

Arabidopsis Description

MRS2-11MRS2-11 [Source:UniProtKB/TrEMBL;Acc:A0A178ULQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.