Factsheet for TraesCS4D01G025300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G286400.1	Wheat	plastid	96.42	96.21
TraesCS4B01G027800.1	Wheat	plastid	95.97	95.76
HORVU4Hr1G004120.2	Barley	plastid	91.72	94.69
Os03t0684400-01	Rice	plastid	81.66	77.0
OQU91190	Sorghum	plastid	79.64	76.89
Zm00001d033527_P001	Maize	plastid	79.19	69.96
GSMUA_Achr7P01670_001	Banana	cytosol	23.27	69.8
VIT_06s0061g01060.t01	Wine grape	plastid	66.22	66.37
Solyc11g066660.1.1	Tomato	plastid	62.86	62.86
KRH22756	Soybean	mitochondrion, plastid	63.98	62.72
CDY26960	Canola	plastid	63.98	62.45
KRH26555	Soybean	plastid	63.53	62.14
CDX92333	Canola	plastid	63.76	61.29
AT5G22830.1	Thale cress	plastid	62.86	61.22
Bra002432.1-P	Field mustard	plastid	63.76	61.03
GSMUA_Achr8P03230_001	Banana	mitochondrion	66.0	59.6
PGSC0003DMT400001226	Potato	mitochondrion	50.34	57.4
GSMUA_Achr7P01660_001	Banana	plastid	35.12	52.33
TraesCS5D01G391700.1	Wheat	plastid	18.57	21.39
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	20.36	21.26
TraesCS3D01G373700.1	Wheat	mitochondrion	18.79	20.74
TraesCS3D01G373600.1	Wheat	mitochondrion	18.79	20.64
TraesCS7D01G494700.1	Wheat	plastid	20.13	20.22
TraesCS3D01G408500.1	Wheat	mitochondrion	18.79	18.67
TraesCS1D01G208700.1	Wheat	mitochondrion	17.9	17.2

Protein Annotations

Gene3D:1.20.58.340	Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010027
GO:GO:0010117	GO:GO:0010960	GO:GO:0015095	GO:GO:0016020	GO:GO:0016043	GO:GO:0030001
GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890
PANTHER:PTHR13890:SF25	SUPFAM:SSF144083	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G025300	EnsemblPlants:TraesCS4D01G025300.1	TIGR:cd12823
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:10981879..10987485

Molecular Weight (calculated)

49674.4 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.161

Length

447 amino acids

Sequence
(BLAST)

001: MASVPASCPR PPQAVVRHLL PLPLQLQLVC RLRRLPLPQL GLSAAARRLP IPRAAEGGDG RAAAKEEEEV EEDERGREAG EERGEDDGAR EAEGAGAARG
101: SGRFAADYIS LGIREPVYEV VEVKANGSVS TEKISRRQLL KSSGLRLRDT RSVDPSLWLM NSMPSLLVRE QAILLNLGSL RAIAMHERVL IFNYNSPGGK
201: VFLELLRPRL NPRNINGGPA MPFQLEVVEA ALLSRIQRLE RRLMHVEPRV AALLEVLPNR LTGDVLEQLR LSKQSLVELG SRAGDLKQML IDLLEDPHEI
301: RRICIMGRNC TLDKVSDDME CSVPLEKQVA EEEEEEIEML LENYLQRCES CHGQAERLLD SAREMEDSIA VNLSSRRLEV SRVELLLQVG TFCVAVGALI
401: AGIFGMNLKS YLENNTWAFW ATTGGIAVGA VAGFFIMYKY LKDRKIL

Best Arabidopsis Sequence Match ( AT5G22830.2 )
(BLAST)

001: MALTPIPSTF TSLFNFSDHS PYPSPSLHYL LPGSSPSFSL QLSALSRTPI YFEALKVLSR SKCFAKSPTT AEDFVGDYES LNVSDDDDGS DSNSSDGDNG
101: GGRDDSKKID SSSSSSSSDS TSLGIREPVY EVVEVKATGA ISTRKINRRQ LLKSSGLRPR DIRSVDPSLF MTNSVPSLLV REHAILLNLG SLRAIAMRDR
201: VLIFDYNRRG GRAFVDTLMP RLNPRSMNGG PSMPFELEAV ESALISRIQR LEQRLMDIEP RVQALLEVLP NRLTADILEE LRISKQRLVE LGSRAGALRQ
301: MLLDLLEDPH EIRRICIMGR NCTLRRGDDD LECTLPSDKL IAEEEEEEIE MLLENYLQRC ESCHGQAERL LDSAKEMEDS IAVNLSSRRL EVSRFELLLQ
401: VGTFCVAVGA LIAGIFGMNL RSYLEEQASA FWLTTGGIII GAAVAFFLMY SYLSRRKIF

Arabidopsis Description

MRS2-11MRS2-11 [Source:UniProtKB/TrEMBL;Acc:A0A178ULQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.