Factsheet for VIT_06s0061g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22756	Soybean	mitochondrion, plastid	76.91	75.22
KRH26555	Soybean	plastid	75.78	73.96
GSMUA_Achr7P01670_001	Banana	cytosol	23.99	71.81
Solyc11g066660.1.1	Tomato	plastid	70.85	70.69
HORVU4Hr1G004120.2	Barley	plastid	67.04	69.05
AT5G22830.1	Thale cress	plastid	69.96	67.97
CDY26960	Canola	plastid	69.51	67.69
CDX92333	Canola	plastid	69.96	67.1
Bra002432.1-P	Field mustard	plastid	70.18	67.02
TraesCS4D01G025300.1	Wheat	plastid	66.37	66.22
TraesCS4A01G286400.1	Wheat	plastid	65.92	65.62
TraesCS4B01G027800.1	Wheat	plastid	65.92	65.62
PGSC0003DMT400001226	Potato	mitochondrion	57.62	65.56
OQU91190	Sorghum	plastid	66.82	64.36
Os03t0684400-01	Rice	plastid	67.71	63.71
GSMUA_Achr8P03230_001	Banana	mitochondrion	69.28	62.42
Zm00001d033527_P001	Maize	plastid	66.14	58.3
GSMUA_Achr7P01660_001	Banana	plastid	36.1	53.67
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	20.63	23.65
VIT_07s0141g00590.t01	Wine grape	cytosol	19.96	22.88
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	22.2	22.3
VIT_07s0031g02820.t01	Wine grape	cytosol	20.4	20.54
VIT_01s0011g00450.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	19.06	20.19
VIT_12s0034g02550.t01	Wine grape	plastid	19.73	19.43
VIT_09s0018g00570.t01	Wine grape	nucleus	10.09	19.23
VIT_03s0091g01190.t01	Wine grape	cytosol	19.73	17.56

Protein Annotations

Gene3D:1.20.58.340	EntrezGene:100246455	wikigene:100246455	Gene3D:2.40.128.330	MapMan:24.3.3.1	ProteinID:CCB44201
ProteinID:CCB44201.1	ncoils:Coil	UniProt:F6GW66	EMBL:FN594957	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010027
GO:GO:0010117	GO:GO:0010960	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	EntrezGene:LOC100246455	wikigene:LOC100246455
InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF25	SUPFAM:SSF144083	TMHMM:TMhelix
UniParc:UPI00015C9AF3	ArrayExpress:VIT_06s0061g01060	EnsemblPlantsGene:VIT_06s0061g01060	EnsemblPlants:VIT_06s0061g01060.t01	unigene:Vvi.25842	RefSeq:XP_002271504
RefSeq:XP_002271504.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:18721653..18741358

Molecular Weight (calculated)

49802.6 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.072

Length

446 amino acids

Sequence
(BLAST)

001: MPLAPSSSPH LLQFPVSSPA HRLLLFSDLT CATFFRSSWP PPFPISLKKA NSFVFPISVR REKCFSKSTE EDLLSDSETQ TGGNDDRPAS VATTGGSQRI
101: AASSTDSLSL GIREPVYEVV EVKSDGKVST RKINRRQLLK SSGLRPRDIR SVDPSLWLTN SMPSLVVREH AILLNLGSLR AIAMQESVFI FDYNRKGGKA
201: FMDSLLPRLN PKNMNGGPSM PFELEVVEAA LLSRIQRLEQ KLMDLEPRVQ ALLEVLPNRL TADILEQLRL SKQTLVELGS RAGALKQMLL DLLEDPHEIR
301: RMCIMGKNCT LVKGNENMEC SVPLEKQIAE EEEEEIEMLL ENYLQRCESC HGQAERLLDS AREMEDSIAV NLSSRRLEVS RVELLLQVGT FCIAVGALVA
401: GIFGMNLKSY LEEHAFAFWL TTAGIIVGAV VAFFLMYSYL RARKIL

Best Arabidopsis Sequence Match ( AT5G22830.2 )
(BLAST)

001: MALTPIPSTF TSLFNFSDHS PYPSPSLHYL LPGSSPSFSL QLSALSRTPI YFEALKVLSR SKCFAKSPTT AEDFVGDYES LNVSDDDDGS DSNSSDGDNG
101: GGRDDSKKID SSSSSSSSDS TSLGIREPVY EVVEVKATGA ISTRKINRRQ LLKSSGLRPR DIRSVDPSLF MTNSVPSLLV REHAILLNLG SLRAIAMRDR
201: VLIFDYNRRG GRAFVDTLMP RLNPRSMNGG PSMPFELEAV ESALISRIQR LEQRLMDIEP RVQALLEVLP NRLTADILEE LRISKQRLVE LGSRAGALRQ
301: MLLDLLEDPH EIRRICIMGR NCTLRRGDDD LECTLPSDKL IAEEEEEEIE MLLENYLQRC ESCHGQAERL LDSAKEMEDS IAVNLSSRRL EVSRFELLLQ
401: VGTFCVAVGA LIAGIFGMNL RSYLEEQASA FWLTTGGIII GAAVAFFLMY SYLSRRKIF

Arabidopsis Description

MRS2-11MRS2-11 [Source:UniProtKB/TrEMBL;Acc:A0A178ULQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.