Factsheet for VIT_09s0018g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073310	Potato	nucleus, peroxisome, plasma membrane, plastid	88.29	88.09
KRH09638	Soybean	plastid	86.49	86.68
KRH23679	Soybean	plastid	85.81	86.0
Solyc06g068490.2.1	Tomato	plastid	88.29	85.03
Bra008431.1-P	Field mustard	plasma membrane	70.5	84.37
AT1G16010.2	Thale cress	plastid	83.33	83.71
Bra035144.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.8	83.17
CDX88569	Canola	cytosol, peroxisome, plasma membrane	76.8	83.17
CDX87352	Canola	cytosol, peroxisome, plasma membrane	76.58	82.93
CDY35061	Canola	plastid	78.38	82.86
Bra026085.1-P	Field mustard	plastid	82.66	82.47
CDY22292	Canola	plastid	75.0	82.22
CDY33361	Canola	plastid	77.25	82.06
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	75.0	82.02
AT1G80900.1	Thale cress	cytosol, nucleus, peroxisome, plastid	81.53	81.72
VIT_09s0018g00570.t01	Wine grape	nucleus	42.57	80.77
GSMUA_Achr9P13370_001	Banana	mitochondrion	77.03	80.09
GSMUA_Achr10P...	Banana	mitochondrion	74.32	77.28
VIT_01s0011g00450.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	55.63	58.67
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.79	48.84
VIT_07s0141g00590.t01	Wine grape	cytosol	42.12	48.07
VIT_03s0091g01190.t01	Wine grape	cytosol	45.95	40.72
VIT_07s0031g02820.t01	Wine grape	cytosol	39.19	39.28
VIT_12s0034g02550.t01	Wine grape	plastid	37.61	36.87
VIT_06s0061g01060.t01	Wine grape	plastid	22.3	22.2

Protein Annotations

Gene3D:1.20.58.340	EntrezGene:100267379	wikigene:100267379	Gene3D:2.40.128.330	MapMan:24.3.3.1	ProteinID:CCB49673
ProteinID:CCB49673.1	ncoils:Coil	UniProt:F6HBS4	EMBL:FN595513	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873
GO:GO:0055085	GO:GO:1903830	EntrezGene:LOC100267379	wikigene:LOC100267379	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544
PANTHER:PTHR13890	PANTHER:PTHR13890:SF10	SUPFAM:SSF144083	TMHMM:TMhelix	UniParc:UPI00019840D9	ArrayExpress:VIT_09s0018g00600
EnsemblPlantsGene:VIT_09s0018g00600	EnsemblPlants:VIT_09s0018g00600.t01	RefSeq:XP_002263392	RefSeq:XP_002263392.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:16818411..16825943

Molecular Weight (calculated)

50495.1 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.091

Length

444 amino acids

Sequence
(BLAST)

001: MADLKERLLP PKPASAVNLR EASYRPTASG RQPFQGMDFL GLKKRGQGVR SWIRVDASGN SQIIEVDKFT VMRRCDLPAR DLRLLDPLFV YPSTILGREK
101: AIVVNLEQIR CIITADEVLL LNSLDSYVLQ YVVELQRRLT APAMGEGWQM EDADLNRRRG CSNFDNGFVN TSPDYLPFEF RALEVALEAA CTFLDAQAAE
201: LEIEAYPLLD ELTSKISTLN LERARRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKRRMESS FYGEQSLMGY RSIDGALSVS APVSPVSSPP
301: ETRRLEKSLS VTRSRHESMK SSESATESIE ELEMLLEAYF VVIDSTLNKL TSLKEYIDDT EDFINIQLDN VRNQLIQFEL LLTTATFVVA IFGVVAGIFG
401: MNFEIPMFDD PGAFKWVLII TGICGIIIFC SFVWFFKYRR LMPL

Best Arabidopsis Sequence Match ( AT1G16010.2 )
(BLAST)

001: MSELKERLLP PRPASAMNLR DASVTRPSAS GRPPLLGVDV LGLKKRGQGL RSWIRVDTSG NTQVMEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KTSSVGEMWQ QENSQLSRRR SRSFDNAFEN SSPDYLPFEF RALEIALEAA CTFLDSQASE
201: LEIEAYPLLD ELTSKISTLN LERVRRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKRRMEGS MYGDQSLLGY RSNDGLSVSA PVSPVSSPPD
301: SRRLDKSLSI ARSRHDSARS SEGAENIEEL EMLLEAYFVV IDSTLNKLTS LKEYIDDTED FINIQLDNVR NQLIQFELLL TTATFVVAIF GVVAGIFGMN
401: FEIDFFNQPG AFRWVLIITG VCGFVIFSAF VWFFKYRRLM PL

Arabidopsis Description

MRS2-1Magnesium transporter MRS2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.