Factsheet for Solyc06g068490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073310	Potato	nucleus, peroxisome, plasma membrane, plastid	96.31	99.78
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	85.03	88.29
KRH09638	Soybean	plastid	84.82	88.26
KRH23679	Soybean	plastid	84.6	88.04
Bra008431.1-P	Field mustard	plasma membrane	69.63	86.52
AT1G16010.2	Thale cress	plastid	82.65	86.2
CDY35061	Canola	plastid	77.66	85.24
CDY33361	Canola	plastid	77.01	84.93
AT1G80900.1	Thale cress	cytosol, nucleus, peroxisome, plastid	81.56	84.88
Bra026085.1-P	Field mustard	plastid	81.78	84.72
CDY22292	Canola	plastid	74.4	84.69
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	74.4	84.48
CDX88569	Canola	cytosol, peroxisome, plasma membrane	75.05	84.39
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	63.34	83.91
CDX87352	Canola	cytosol, peroxisome, plasma membrane	74.4	83.66
Bra035144.1-P	Field mustard	cytosol, peroxisome, plasma membrane	74.4	83.66
TraesCS7B01G414200.1	Wheat	endoplasmic reticulum, plasma membrane	62.69	83.05
GSMUA_Achr9P13370_001	Banana	mitochondrion	75.27	81.26
GSMUA_Achr10P...	Banana	mitochondrion	73.32	79.16
Zm00001d000430_P001	Maize	plastid	69.63	75.0
Zm00001d036714_P002	Maize	plastid	69.2	74.19
Os06t0650800-01	Rice	plasma membrane	69.85	73.85
HORVU2Hr1G086400.6	Barley	cytosol	48.37	73.84
HORVU7Hr1G113400.9	Barley	plastid	68.55	71.66
TraesCS7A01G506600.1	Wheat	plastid	68.76	71.56
TraesCS7D01G494700.1	Wheat	plastid	68.76	71.24
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	63.99	68.93
TraesCS2A01G354100.1	Wheat	cytosol, peroxisome, plasma membrane	63.77	68.69
TraesCS2B01G375200.1	Wheat	cytosol, peroxisome, plasma membrane	63.77	68.69
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	63.77	66.67
Zm00001d003125_P001	Maize	cytosol, nucleus, plasma membrane, plastid	63.12	64.67
Os04t0501100-00	Rice	cytosol, plasma membrane	31.24	64.0
Solyc05g012220.2.1	Tomato	cytosol, peroxisome, plasma membrane	53.36	59.28
Solyc09g065920.2.1	Tomato	nucleus	39.05	47.75
Solyc03g005390.2.1	Tomato	cytosol, peroxisome, vacuole	39.05	45.57
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	45.12	41.77
Solyc01g103890.2.1	Tomato	nucleus	36.23	38.66
Solyc11g066660.1.1	Tomato	plastid	21.04	21.7

Protein Annotations

Gene3D:1.20.58.340	Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873
GO:GO:0055085	GO:GO:1903830	UniProt:K4C824	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890
PANTHER:PTHR13890:SF10	SUPFAM:SSF144083	EnsemblPlantsGene:Solyc06g068490.2	EnsemblPlants:Solyc06g068490.2.1	TMHMM:TMhelix	UniParc:UPI00027663A6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:42447759..42453413

Molecular Weight (calculated)

52398.5 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.116

Length

461 amino acids

Sequence
(BLAST)

001: MTSALPIYRE ILKSSLMAEI KERLLPPKPA SAANLREVSY RPPTSGRQPF QGIDVLGLKK RGQGLRSWIR VDTSGNSQVI EVDKFTMMRR CDLPARDLRL
101: LDPLFVYPST ILGREKAIVV NLEQIRCIIT ADEVLLLNSL DSYVLQYVVE LQRRLQAAGA GEVWQSEGEL SRRRGGRNIE NMFGNPSPDY LPFEFRALEV
201: ALEAACTFLD SQAAELEIEA YPLLDELTSK ISTLNLERVR RLKSRLVALT RRVQKVRDEI EQLMDDDGDM AEMYLTEKKR RMELSCYGDQ SLLGYRSTDG
301: ALSLSAPVSP VSSPPESRRL EKSLSIARSR HESMRSSESG TETQSIEELE MLLEAYFVVI DSTLNKLTSL KEYIDDTEDF INIQLDNVRN QLIQFELLLT
401: TATFVVAIFG VVAGIFGMNF EIPMFNEPNA FKWVLIITGV TGAVIFFAFL WFFKYRRLMP L

Best Arabidopsis Sequence Match ( AT1G16010.2 )
(BLAST)

001: MSELKERLLP PRPASAMNLR DASVTRPSAS GRPPLLGVDV LGLKKRGQGL RSWIRVDTSG NTQVMEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KTSSVGEMWQ QENSQLSRRR SRSFDNAFEN SSPDYLPFEF RALEIALEAA CTFLDSQASE
201: LEIEAYPLLD ELTSKISTLN LERVRRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKRRMEGS MYGDQSLLGY RSNDGLSVSA PVSPVSSPPD
301: SRRLDKSLSI ARSRHDSARS SEGAENIEEL EMLLEAYFVV IDSTLNKLTS LKEYIDDTED FINIQLDNVR NQLIQFELLL TTATFVVAIF GVVAGIFGMN
401: FEIDFFNQPG AFRWVLIITG VCGFVIFSAF VWFFKYRRLM PL

Arabidopsis Description

MRS2-1Magnesium transporter MRS2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.