Factsheet for Solyc01g106900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g007840.2.1
Solyc04g074100.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19640.1	Solyc04g007840.2.1	AT1G70780.1	21798944
AT3G19640.1	Solyc04g074100.2.1	AT1G70780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066130	Potato	cytosol, peroxisome, plastid	97.39	97.39
KRH77919	Soybean	cytosol	60.84	77.1
VIT_03s0091g01190.t01	Wine grape	cytosol	76.51	76.05
KRH27585	Soybean	cytosol	59.84	74.69
Bra022441.1-P	Field mustard	cytosol	60.44	68.25
CDY66275	Canola	cytosol, peroxisome, plasma membrane	60.44	68.25
Bra038223.1-P	Field mustard	cytosol, golgi, peroxisome	59.84	64.78
CDY42196	Canola	cytosol	59.04	64.47
CDX95430	Canola	cytosol, golgi, peroxisome	58.84	64.4
AT3G19640.1	Thale cress	cytosol, golgi, peroxisome, plastid	62.45	64.26
GSMUA_Achr5P01890_001	Banana	nucleus	61.45	61.82
OQU81611	Sorghum	peroxisome, plasma membrane, plastid	13.86	54.33
Os01t0908500-01	Rice	plasma membrane	47.39	53.15
Zm00001d042441_P001	Maize	mitochondrion	46.59	52.37
Zm00001d012102_P001	Maize	mitochondrion	46.59	52.37
EES04071	Sorghum	mitochondrion	46.59	52.37
TraesCS3B01G448800.1	Wheat	mitochondrion	46.99	52.12
TraesCS3A01G414000.1	Wheat	mitochondrion	46.99	51.88
TraesCS3D01G408500.1	Wheat	mitochondrion	46.79	51.78
HORVU3Hr1G092200.1	Barley	mitochondrion	46.39	51.56
KXG25477	Sorghum	plastid	36.95	51.25
HORVU3Hr1G082870.5	Barley	mitochondrion	40.36	49.51
Zm00001d003666_P001	Maize	mitochondrion	39.96	49.38
EES01822	Sorghum	mitochondrion	40.96	49.28
TraesCS3B01G413200.1	Wheat	mitochondrion	39.76	48.89
TraesCS3D01G373700.1	Wheat	mitochondrion	39.56	48.64
TraesCS3A01G380600.1	Wheat	mitochondrion	39.56	48.64
TraesCS3D01G373600.1	Wheat	mitochondrion	39.56	48.4
Os01t0869200-01	Rice	mitochondrion, plastid	40.36	48.09
KXG34188	Sorghum	plasma membrane	14.26	47.97
TraesCS3B01G413100.1	Wheat	cytosol, nucleus, plastid, vacuole	39.16	47.91
TraesCS3A01G380500.1	Wheat	mitochondrion	38.96	47.55
EES10822	Sorghum	mitochondrion	39.56	46.79
HORVU3Hr1G082880.2	Barley	cytosol, mitochondrion, peroxisome, vacuole	39.36	46.78
Solyc09g065920.2.1	Tomato	nucleus	35.14	46.42
Os04t0430900-00	Rice	cytosol, plastid	38.96	45.54
Solyc06g068490.2.1	Tomato	plastid	41.77	45.12
Solyc03g005390.2.1	Tomato	cytosol, peroxisome, vacuole	35.34	44.56
Zm00001d025416_P001	Maize	mitochondrion	35.54	44.47
CDY58861	Canola	nucleus	60.64	41.37
Solyc05g012220.2.1	Tomato	cytosol, peroxisome, plasma membrane	33.73	40.48
Solyc01g103890.2.1	Tomato	nucleus	31.73	36.57
Solyc11g066660.1.1	Tomato	plastid	17.67	19.69

Protein Annotations

Gene3D:1.20.58.340	Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0015095
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	GO:GO:1903830
UniProt:K4B2Q7	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF4	EnsemblPlantsGene:Solyc01g106900.2
EnsemblPlants:Solyc01g106900.2.1	TMHMM:TMhelix	UniParc:UPI0002767A98	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:94608862..94617219

Molecular Weight (calculated)

54973.3 Da

IEP (calculated)

4.557

GRAVY (calculated)

-0.318

Length

498 amino acids

Sequence
(BLAST)

001: MRGVTPPQKF SVPSPDDDAD IIRPNTVIPG GVTVGAAMRK KATGVRSWLL LDSTGQTQVV EAGKHAIMRR TGLPARDLRI LDPLLSYPST VLGRERAIVI
101: NLEHIKAIIT AQEVLLLNAR DPSVAPFVEE VQRRILRHHQ ATKSQEAGGG GNNADWTNLY DLEEPQSEEV SPPNVSANFQ SMDENKSDGK QLTGENRDGP
201: KLLPFEFVAL EACLEAACSC LDNEARTLEQ EAHPALDKLT SKISTLNLER VRQIKSRLVA ITGRVQKVRD ELEHLLDDDE DMAEMYLTDK LMEQLENSSV
301: SSISGQDGID EEVIQSNMDD RVPVEISMDA NAGSTSYDAD TPHIDQHQER LYGGPNALSR GSRGTHTSTT RSAISKHLDV EELEMLLEAY FVQIDGTLNK
401: LNTLREYVDD TEDYINIMLD DKQNHLLQMG VMLTTATLVV SAFVVVAGIF GMNINIELFD EKKAGMPEFL WTIGGGATGS LFLYVVAIAW GKHKQLLE

Best Arabidopsis Sequence Match ( AT3G19640.1 )
(BLAST)

001: MRGARPDEFN FSTNPSTPNT GQPTPTYPAG VGGGGGGRKK GVGVRTWLVL NSSGQSEPKE EGKHSIMRRT GLPARDLRIL DPLLSYPSTV LGRERAIVIN
101: LEHIKAIITA QEVLLLNSKD PSVSPFIDEL QRRILCHHHA TKPQEEQNSG GEPHTRVDPA QGEAGTEQSS GDQGSEAKKD AKQSLENQDG SKVLPFEFVA
201: LEACLEAASS SLEHEALRLE LEAHPALDKL TSKISTLNLE RVRQIKSRLV AITGRVQKVR DELEHLLDDD EDMAEMYLTE KLAQKLEDSS NSSMNESDTF
301: EVDLPQGDED DRLPPEFASE ANRDGRYLQA NDAHELLMST QSALSRNSRG THTSSTRSAM TNKLDVEELE MLLEAYFVQI DGILNKLSTL REYVDDTEDY
401: INIMLDDKQN HLLQMGVMLT TATLVMSAFI AVAGVFGMNI TIELFTDNKH GPSRFIWTVI GGSIGSICLY VGAIGWCKYK RLLE

Arabidopsis Description

MRS2-3MRS2-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VLJ7]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.