CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81611	Sorghum	peroxisome, plasma membrane, plastid	83.78	97.64
KXG25477	Sorghum	plastid	85.14	35.1
EES10822	Sorghum	mitochondrion	54.05	19.0
Os04t0430900-00	Rice	cytosol, plastid	53.38	18.54
EES01822	Sorghum	mitochondrion	50.0	17.87
EES04071	Sorghum	mitochondrion	52.7	17.61
GSMUA_Achr5P26100_001	Banana	cytosol	52.03	17.54
GSMUA_Achr11P...	Banana	cytosol	51.35	17.12
Bra022441.1-P	Field mustard	cytosol	45.27	15.19
CDY66275	Canola	cytosol, peroxisome, plasma membrane	45.27	15.19
CDX95430	Canola	cytosol, golgi, peroxisome	45.95	14.95
CDY42196	Canola	cytosol	45.95	14.91
Bra038223.1-P	Field mustard	cytosol, golgi, peroxisome	45.95	14.78
VIT_07s0031g02820.t01	Wine grape	cytosol	43.92	14.67
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	33.78	14.37
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	47.97	14.26
PGSC0003DMT400066130	Potato	cytosol, peroxisome, plastid	47.97	14.26
KRH23620	Soybean	mitochondrion	39.86	14.22
EER90897	Sorghum	cytosol	37.16	14.21
AT3G19640.1	Thale cress	cytosol, golgi, peroxisome, plastid	45.27	13.84
KRH40989	Soybean	mitochondrion	37.16	13.38
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	33.78	11.34
CDY58861	Canola	nucleus	45.27	9.18
EER91996	Sorghum	mitochondrion	27.7	8.58
OQU93276	Sorghum	plastid	24.32	8.33
OQU91190	Sorghum	plastid	20.27	6.48
KRH09687	Soybean	mitochondrion	12.84	6.15
KRH59642	Soybean	cytosol	0.68	0.61

Protein Annotations

EnsemblPlants:KXG34188	EnsemblPlantsGene:SORBI_3003G438000	Gene3D:1.20.58.340	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR13890	PANTHER:PTHR13890:SF9	ProteinID:KXG34188	ProteinID:KXG34188.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00081ABA8C	UniProt:A0A1B6Q8D2	MapMan:24.3.3.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:73825466..73826187

Molecular Weight (calculated)

16381.8 Da

IEP (calculated)

3.975

GRAVY (calculated)

0.414

Length

148 amino acids

Sequence
(BLAST)

001: MDHGVEVPGC ASVASDVAET STPEFIQFLP KIDELESLLE VYFVQIDGTL NKLSTLREYV DDTEDYINIM LDDKQNQLLQ MGVVLSTVTL LVTSAVVVTA
101: IFGTNIHITL YRITDLNVFW EAVGGTLAGV ATLFLGAMLY YWKNGILR

Best Arabidopsis Sequence Match ( AT3G19640.1 )
(BLAST)

001: MRGARPDEFN FSTNPSTPNT GQPTPTYPAG VGGGGGGRKK GVGVRTWLVL NSSGQSEPKE EGKHSIMRRT GLPARDLRIL DPLLSYPSTV LGRERAIVIN
101: LEHIKAIITA QEVLLLNSKD PSVSPFIDEL QRRILCHHHA TKPQEEQNSG GEPHTRVDPA QGEAGTEQSS GDQGSEAKKD AKQSLENQDG SKVLPFEFVA
201: LEACLEAASS SLEHEALRLE LEAHPALDKL TSKISTLNLE RVRQIKSRLV AITGRVQKVR DELEHLLDDD EDMAEMYLTE KLAQKLEDSS NSSMNESDTF
301: EVDLPQGDED DRLPPEFASE ANRDGRYLQA NDAHELLMST QSALSRNSRG THTSSTRSAM TNKLDVEELE MLLEAYFVQI DGILNKLSTL REYVDDTEDY
401: INIMLDDKQN HLLQMGVMLT TATLVMSAFI AVAGVFGMNI TIELFTDNKH GPSRFIWTVI GGSIGSICLY VGAIGWCKYK RLLE

Arabidopsis Description

MRS2-3MRS2-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VLJ7]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.