Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038223.1-P | Field mustard | cytosol, golgi, peroxisome | 97.81 | 96.96 |
| CDX95430 | Canola | cytosol, golgi, peroxisome | 96.05 | 96.26 |
| CDY66275 | Canola | cytosol, peroxisome, plasma membrane | 75.44 | 78.0 |
| AT3G19640.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 78.73 | 74.17 |
| KRH77919 | Soybean | cytosol | 58.11 | 67.43 |
| KRH27585 | Soybean | cytosol | 57.24 | 65.41 |
| Solyc01g106900.2.1 | Tomato | cytosol, peroxisome, plastid | 64.47 | 59.04 |
| PGSC0003DMT400066130 | Potato | cytosol, peroxisome, plastid | 64.04 | 58.63 |
| VIT_03s0091g01190.t01 | Wine grape | cytosol | 63.82 | 58.08 |
| OQU81611 | Sorghum | peroxisome, plasma membrane, plastid | 14.25 | 51.18 |
| Zm00001d012102_P001 | Maize | mitochondrion | 49.56 | 51.02 |
| EES04071 | Sorghum | mitochondrion | 48.9 | 50.34 |
| TraesCS3B01G448800.1 | Wheat | mitochondrion | 49.56 | 50.33 |
| Zm00001d042441_P001 | Maize | mitochondrion | 48.68 | 50.11 |
| TraesCS3A01G414000.1 | Wheat | mitochondrion | 49.56 | 50.11 |
| TraesCS3D01G408500.1 | Wheat | mitochondrion | 49.34 | 50.0 |
| HORVU3Hr1G092200.1 | Barley | mitochondrion | 48.9 | 49.78 |
| GSMUA_Achr5P01890_001 | Banana | nucleus | 53.95 | 49.7 |
| Os01t0908500-01 | Rice | plasma membrane | 48.03 | 49.32 |
| TraesCS3A01G380600.1 | Wheat | mitochondrion | 43.2 | 48.64 |
| TraesCS3B01G413200.1 | Wheat | mitochondrion | 42.98 | 48.4 |
| TraesCS3D01G373700.1 | Wheat | mitochondrion | 42.76 | 48.15 |
| HORVU3Hr1G082870.5 | Barley | mitochondrion | 42.54 | 47.78 |
| CDY58861 | Canola | nucleus | 76.32 | 47.67 |
| KXG25477 | Sorghum | plastid | 37.5 | 47.63 |
| TraesCS3B01G413100.1 | Wheat | cytosol, nucleus, plastid, vacuole | 42.11 | 47.17 |
| TraesCS3D01G373600.1 | Wheat | mitochondrion | 41.67 | 46.68 |
| CDX87352 | Canola | cytosol, peroxisome, plasma membrane | 41.89 | 46.59 |
| CDX88569 | Canola | cytosol, peroxisome, plasma membrane | 41.67 | 46.34 |
| EES01822 | Sorghum | mitochondrion | 41.89 | 46.14 |
| KXG34188 | Sorghum | plasma membrane | 14.91 | 45.95 |
| TraesCS3A01G380500.1 | Wheat | mitochondrion | 41.01 | 45.83 |
| Zm00001d003666_P001 | Maize | mitochondrion | 40.35 | 45.66 |
| Os01t0869200-01 | Rice | mitochondrion, plastid | 41.45 | 45.22 |
| HORVU3Hr1G082880.2 | Barley | cytosol, mitochondrion, peroxisome, vacuole | 41.23 | 44.87 |
| EES10822 | Sorghum | mitochondrion | 40.79 | 44.18 |
| Os04t0430900-00 | Rice | cytosol, plastid | 40.57 | 43.43 |
| Zm00001d025416_P001 | Maize | mitochondrion | 37.72 | 43.22 |
| CDY22292 | Canola | plastid | 38.38 | 43.21 |
| CDY49735 | Canola | mitochondrion, peroxisome, plasma membrane, plastid | 38.38 | 43.1 |
| CDY64845 | Canola | mitochondrion, peroxisome, plastid | 34.43 | 42.9 |
| CDY35061 | Canola | plastid | 39.47 | 42.86 |
| CDX81228 | Canola | cytosol, mitochondrion, plastid | 34.43 | 42.43 |
| CDY33361 | Canola | plastid | 38.38 | 41.87 |
| CDY64844 | Canola | cytosol | 35.53 | 41.65 |
| CDX85800 | Canola | cytosol | 35.31 | 41.39 |
| CDY18706 | Canola | cytosol, mitochondrion, plastid | 34.43 | 40.89 |
| CDY51292 | Canola | cytosol, peroxisome, plastid | 33.77 | 40.74 |
| CDY56489 | Canola | cytosol, peroxisome, plastid | 33.77 | 40.74 |
| CDY51207 | Canola | cytosol, nucleus, peroxisome | 37.06 | 40.14 |
| CDY02984 | Canola | cytosol, peroxisome, plasma membrane | 36.84 | 39.91 |
| CDY36615 | Canola | cytosol, nucleus, peroxisome | 36.84 | 39.91 |
| CDY46811 | Canola | cytosol | 32.46 | 39.47 |
| CDY31314 | Canola | cytosol | 32.24 | 38.28 |
| CDY33715 | Canola | cytosol | 28.95 | 35.58 |
| CDY39718 | Canola | cytosol | 28.95 | 34.92 |
| CDX99295 | Canola | cytosol, mitochondrion, nucleus, plastid | 31.36 | 34.13 |
| CDX92290 | Canola | cytosol, mitochondrion, nucleus, plastid | 31.36 | 34.05 |
| CDY65607 | Canola | plastid | 32.02 | 34.03 |
| CDY49260 | Canola | plastid | 31.8 | 33.8 |
| CDY26960 | Canola | plastid | 17.76 | 17.69 |
| CDX92333 | Canola | plastid | 17.54 | 17.2 |
Protein Annotations
| EnsemblPlants:CDY42196 | EnsemblPlantsGene:GSBRNA2T00074408001 | Gene3D:1.20.58.340 | Gene3D:2.40.128.330 | GO:A0A078HWR9 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR13890 | PANTHER:PTHR13890:SF4 | ProteinID:CDY42196 |
| ProteinID:CDY42196.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEAF51 | UniProt:A0A078HWR9 | MapMan:24.3.3.1 |
Description
BnaA01g25990DBnaA01g25990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWR9]
Coordinates
chrLK032518:+:22353..24510
Molecular Weight (calculated)
50318.2 Da
IEP (calculated)
5.627
GRAVY (calculated)
-0.274
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGPRPEDFD SNAGHPTPTF PAGGSRKKGM GVRTWLVLCS SGKEQATEAG KHTIMRRTGL PARDLRILDP LLSYPSTVLG RERAIVINLE HIKAIITGQE
101: VLILNSKDPS VAPFIEELQR RIRCHHHATK PQVGAAQGEA GTSQLSGEEA RKDKKQSLGN QDGSKVLPFE FVALEACLEA AITSLESEAV RLELEAHPAL
201: DKLTIKINTL NLERVRQIKS RLVAITGRVQ KVRDELEKLL NDDEDMAEMY LTDKLAQKQL ENSTASSTSD TVVVDLPEGD EDDRHVADYF EHATLVSSES
301: CHRGSDAHNL LMRAHSALSR NSRGTSSTRS GMTNKLNVQE LEMLLEAYFV QIDGILNKLS TLTEYVDDTE DYINIMLDDK QNNLLQMGVM LTTAGLVMSL
401: FIAVAGVFGM NINIELFNDE VAGPGKFMWT VVGGTAGSLF LYFGAIGWYK HSRLLE
101: VLILNSKDPS VAPFIEELQR RIRCHHHATK PQVGAAQGEA GTSQLSGEEA RKDKKQSLGN QDGSKVLPFE FVALEACLEA AITSLESEAV RLELEAHPAL
201: DKLTIKINTL NLERVRQIKS RLVAITGRVQ KVRDELEKLL NDDEDMAEMY LTDKLAQKQL ENSTASSTSD TVVVDLPEGD EDDRHVADYF EHATLVSSES
301: CHRGSDAHNL LMRAHSALSR NSRGTSSTRS GMTNKLNVQE LEMLLEAYFV QIDGILNKLS TLTEYVDDTE DYINIMLDDK QNNLLQMGVM LTTAGLVMSL
401: FIAVAGVFGM NINIELFNDE VAGPGKFMWT VVGGTAGSLF LYFGAIGWYK HSRLLE
001: MRGARPDEFN FSTNPSTPNT GQPTPTYPAG VGGGGGGRKK GVGVRTWLVL NSSGQSEPKE EGKHSIMRRT GLPARDLRIL DPLLSYPSTV LGRERAIVIN
101: LEHIKAIITA QEVLLLNSKD PSVSPFIDEL QRRILCHHHA TKPQEEQNSG GEPHTRVDPA QGEAGTEQSS GDQGSEAKKD AKQSLENQDG SKVLPFEFVA
201: LEACLEAASS SLEHEALRLE LEAHPALDKL TSKISTLNLE RVRQIKSRLV AITGRVQKVR DELEHLLDDD EDMAEMYLTE KLAQKLEDSS NSSMNESDTF
301: EVDLPQGDED DRLPPEFASE ANRDGRYLQA NDAHELLMST QSALSRNSRG THTSSTRSAM TNKLDVEELE MLLEAYFVQI DGILNKLSTL REYVDDTEDY
401: INIMLDDKQN HLLQMGVMLT TATLVMSAFI AVAGVFGMNI TIELFTDNKH GPSRFIWTVI GGSIGSICLY VGAIGWCKYK RLLE
101: LEHIKAIITA QEVLLLNSKD PSVSPFIDEL QRRILCHHHA TKPQEEQNSG GEPHTRVDPA QGEAGTEQSS GDQGSEAKKD AKQSLENQDG SKVLPFEFVA
201: LEACLEAASS SLEHEALRLE LEAHPALDKL TSKISTLNLE RVRQIKSRLV AITGRVQKVR DELEHLLDDD EDMAEMYLTE KLAQKLEDSS NSSMNESDTF
301: EVDLPQGDED DRLPPEFASE ANRDGRYLQA NDAHELLMST QSALSRNSRG THTSSTRSAM TNKLDVEELE MLLEAYFVQI DGILNKLSTL REYVDDTEDY
401: INIMLDDKQN HLLQMGVMLT TATLVMSAFI AVAGVFGMNI TIELFTDNKH GPSRFIWTVI GGSIGSICLY VGAIGWCKYK RLLE
Arabidopsis Description
MRS2-3MRS2-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VLJ7]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.