CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35061	Canola	plastid	97.61	97.14
Bra026085.1-P	Field mustard	plastid	99.04	93.03
AT1G16010.2	Thale cress	plastid	94.5	89.37
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	84.93	87.44
CDY22292	Canola	plastid	84.69	87.41
CDX88569	Canola	cytosol, peroxisome, plasma membrane	81.1	82.68
CDX87352	Canola	cytosol, peroxisome, plasma membrane	80.38	81.95
KRH09638	Soybean	plastid	84.93	80.14
KRH23679	Soybean	plastid	84.69	79.91
PGSC0003DMT400073310	Potato	nucleus, peroxisome, plasma membrane, plastid	84.93	79.78
OQU76793	Sorghum	endoplasmic reticulum, peroxisome	64.35	77.3
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	82.06	77.25
Solyc06g068490.2.1	Tomato	plastid	84.93	77.01
TraesCS7B01G414200.1	Wheat	endoplasmic reticulum, plasma membrane	63.64	76.44
GSMUA_Achr9P13370_001	Banana	mitochondrion	74.88	73.3
GSMUA_Achr10P...	Banana	mitochondrion	73.21	71.66
Zm00001d000430_P001	Maize	plastid	70.81	69.16
Zm00001d036714_P002	Maize	plastid	70.81	68.84
Os06t0650800-01	Rice	plasma membrane	71.05	68.12
HORVU2Hr1G086400.6	Barley	cytosol	49.04	67.88
HORVU7Hr1G113400.9	Barley	plastid	71.05	67.35
TraesCS7D01G494700.1	Wheat	plastid	71.53	67.19
TraesCS7A01G506600.1	Wheat	plastid	71.05	67.04
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	66.75	65.19
TraesCS2A01G354100.1	Wheat	cytosol, peroxisome, plasma membrane	66.75	65.19
TraesCS2B01G375200.1	Wheat	cytosol, peroxisome, plasma membrane	66.51	64.95
EES11075	Sorghum	cytosol, peroxisome, plasma membrane	65.55	62.13
Zm00001d003125_P001	Maize	cytosol, nucleus, plasma membrane, plastid	65.31	60.67
Os04t0501100-00	Rice	cytosol, plasma membrane	30.62	56.89
CDY51207	Canola	cytosol, nucleus, peroxisome	52.15	51.78
CDY02984	Canola	cytosol, peroxisome, plasma membrane	52.15	51.78
CDY36615	Canola	cytosol, nucleus, peroxisome	52.15	51.78
CDY51292	Canola	cytosol, peroxisome, plastid	40.67	44.97
CDY56489	Canola	cytosol, peroxisome, plastid	40.43	44.71
CDX81228	Canola	cytosol, mitochondrion, plastid	39.47	44.59
CDY64845	Canola	mitochondrion, peroxisome, plastid	38.76	44.26
CDY64844	Canola	cytosol	40.19	43.19
CDX85800	Canola	cytosol	40.19	43.19
CDY18706	Canola	cytosol, mitochondrion, plastid	39.47	42.97
CDY46811	Canola	cytosol	37.32	41.6
CDY66275	Canola	cytosol, peroxisome, plasma membrane	42.82	40.59
CDY31314	Canola	cytosol	37.08	40.36
CDX95430	Canola	cytosol, golgi, peroxisome	42.34	38.9
CDY42196	Canola	cytosol	41.87	38.38
CDY33715	Canola	cytosol	30.86	34.77
CDY65607	Canola	plastid	35.65	34.73
CDY49260	Canola	plastid	35.17	34.27
CDY39718	Canola	cytosol	30.86	34.13
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	33.97	33.81
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	33.73	33.65
CDY58861	Canola	nucleus	43.06	24.66
CDY26960	Canola	plastid	21.05	19.21
CDX92333	Canola	plastid	21.29	19.14

Protein Annotations

EnsemblPlants:CDY33361	EnsemblPlantsGene:GSBRNA2T00054206001	Gene3D:1.20.58.340	Gene3D:2.40.128.330	GO:A0A078H664	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR13890	PANTHER:PTHR13890:SF10	ProteinID:CDY33361
ProteinID:CDY33361.1	SEG:seg	SUPFAM:SSF144083	TMHMM:TMhelix	UniParc:UPI0004EE8312	UniProt:A0A078H664
MapMan:24.3.3.1	:	:	:	:	:

Description

BnaC05g12220DBnaC05g12220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H664]

Coordinates

chrLK032312:+:254894..257232

Molecular Weight (calculated)

47514.4 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.151

Length

418 amino acids

Sequence
(BLAST)

001: MSELKERLLP PRPASALNLR DAAASRSSAS GRTSLLGVDV LGLKKRGQGL RSWIRVDTSG NTQVMEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KTSGVGEIWQ QDNGQLSRRR RTACTFLDSQ ASELEIEAYP LLDELTSKIS TLNLERVRRL
201: KSRLVALTRR VQKVRDEIEQ LMDDDGDMAE MYLTEKKKRM EGSLYGDHQS LLGYRSNDGL SVSAPVSPVS SPPDSRSRLD RSVSIARSRH DSARSSEGNT
301: ENIEELEMLL EAYFVVIDST LNKLTSLKEY IDDTEDFINI QLDNVRNQLI QFELLLTTAT FVVAIFGVVA GIFGMNFEID FFTQPGAFRW VLLITGICGF
401: VIFSAFVWFF KYRRLMPL

Best Arabidopsis Sequence Match ( AT1G16010.2 )
(BLAST)

001: MSELKERLLP PRPASAMNLR DASVTRPSAS GRPPLLGVDV LGLKKRGQGL RSWIRVDTSG NTQVMEVDKF TMMRRCDLPA RDLRLLDPLF VYPSTILGRE
101: KAIVVNLEQI RCIITADEVL LLNSLDNYVL RYVVELQQRL KTSSVGEMWQ QENSQLSRRR SRSFDNAFEN SSPDYLPFEF RALEIALEAA CTFLDSQASE
201: LEIEAYPLLD ELTSKISTLN LERVRRLKSR LVALTRRVQK VRDEIEQLMD DDGDMAEMYL TEKKRRMEGS MYGDQSLLGY RSNDGLSVSA PVSPVSSPPD
301: SRRLDKSLSI ARSRHDSARS SEGAENIEEL EMLLEAYFVV IDSTLNKLTS LKEYIDDTED FINIQLDNVR NQLIQFELLL TTATFVVAIF GVVAGIFGMN
401: FEIDFFNQPG AFRWVLIITG VCGFVIFSAF VWFFKYRRLM PL

Arabidopsis Description

MRS2-1Magnesium transporter MRS2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.