CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18706	Canola	cytosol, mitochondrion, plastid	99.73	96.09
Bra037781.1-P	Field mustard	cytosol, mitochondrion, plastid	99.46	95.83
CDY56489	Canola	cytosol, peroxisome, plastid	92.7	90.74
CDY51292	Canola	cytosol, peroxisome, plastid	92.16	90.21
Os03t0742400-01	Rice	plasma membrane	54.86	81.53
AT5G64560.1	Thale cress	cytosol	86.76	81.47
CDY46811	Canola	cytosol	81.89	80.8
CDY31314	Canola	cytosol	82.16	79.17
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	81.89	77.89
CDY64845	Canola	mitochondrion, peroxisome, plastid	75.14	75.96
KRG92427	Soybean	cytosol, peroxisome, plasma membrane	80.0	74.94
EER90897	Sorghum	cytosol	78.38	74.94
CDX85800	Canola	cytosol	78.38	74.55
HORVU5Hr1G094250.1	Barley	plastid	77.84	74.23
KRH34378	Soybean	cytosol, peroxisome, plastid	78.11	74.1
TraesCS5D01G391700.1	Wheat	plastid	77.57	73.97
CDY64844	Canola	cytosol	77.3	73.52
TraesCS5A01G382400.1	Wheat	plastid	77.3	72.96
Solyc03g005390.2.1	Tomato	cytosol, peroxisome, vacuole	77.3	72.41
TraesCS5B01G386300.1	Wheat	plastid	74.86	71.39
CDX88569	Canola	cytosol, peroxisome, plasma membrane	48.92	44.15
CDX87352	Canola	cytosol, peroxisome, plasma membrane	48.38	43.66
CDY35061	Canola	plastid	46.76	41.19
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	45.95	40.57
CDY65607	Canola	plastid	47.03	40.56
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	45.95	40.48
CDY49260	Canola	plastid	46.76	40.33
CDY22292	Canola	plastid	43.78	40.0
CDY49735	Canola	mitochondrion, peroxisome, plasma membrane, plastid	43.78	39.9
CDY33715	Canola	cytosol	40.0	39.89
CDY33361	Canola	plastid	44.59	39.47
CDY66275	Canola	cytosol, peroxisome, plasma membrane	45.95	38.55
CDY39718	Canola	cytosol	39.19	38.36
CDY36615	Canola	cytosol, nucleus, peroxisome	43.51	38.24
CDY02984	Canola	cytosol, peroxisome, plasma membrane	43.51	38.24
CDY51207	Canola	cytosol, nucleus, peroxisome	43.24	38.0
CDX95430	Canola	cytosol, golgi, peroxisome	43.24	35.16
CDY42196	Canola	cytosol	42.43	34.43
CDY58861	Canola	nucleus	46.22	23.42
CDY26960	Canola	plastid	24.32	19.65
CDX92333	Canola	plastid	24.32	19.35

Protein Annotations

Gene3D:2.40.128.330	MapMan:24.3.3.1	GO:A0A078D1K7	EnsemblPlants:CDX81228	ProteinID:CDX81228	ProteinID:CDX81228.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00134701001	InterPro:MgTranspt_CorA/ZnTranspt_ZntB
PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF8	SUPFAM:SSF144083	TMHMM:TMhelix	UniParc:UPI0004EDF01D
SEG:seg	:	:	:	:	:

Description

BnaC09g06390D

Coordinates

chrLK031824:-:237192..239938

Molecular Weight (calculated)

41673.6 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.182

Length

370 amino acids

Sequence
(BLAST)

001: MAHNSVNVVA TKTKPQSSRS WVSIVATGES EALDVDKYAI MHRVQIHARD LRILDPNLSY PSTILGRERA IVLNLEHIKA IITSEEVLLR DPSDEHVIPV
101: VKELERRLPS SNAHNDPDAG EEDESPFEFR ALEVFLEAIC SFLAARTTEL ETAAYPALDE LTSKISSRNL DRVRKLKSAM TRLTARVQKV RDELEQLLDD
201: DDDMADLYLS RKLFSASSAS TSPNYYLTSP TIGSKISRAS RASLATVRGD ENDVEELEML LEAYFMQIDS TLNRLTTLRE YIDDTEDYIN IQLDNHRNQL
301: IQLELVLSSG TVCSSFYSLV AGIFGMNIPY TWNNDHGYMF KYVVIGTGMC CVILFVFIMS HARYKGLVGS

Best Arabidopsis Sequence Match ( AT5G64560.1 )
(BLAST)

001: MAQNGYLVPA DPSAVVTVKK KTPQASWALI DATGQSEPLD VDKYEIMHRV QIHARDLRIL DPNLSYPSTI LGRERAIVLN LEHIKAIITS EEVLLRDPSD
101: ENVIPVVEEL RRRLPVGNAS HNGGQGDGKE IAGAQNDGDT GDEDESPFEF RALEVALEAI CSFLAARTAE LETAAYPALD ELTSKISSRN LDRVRKLKSA
201: MTRLTARVQK VRDELEQLLD DDDDMADLYL SRKLSSASSP ISSIGEPNWY TTSPTIGSKI SRASRASLAT VHGDENDVEE LEMLLEAYFM QIDSTLNRLT
301: TLREYIDDTE DYINIQLDNH RNQLIQLELV LSSGTVCLSM YSLVAGIFGM NIPYTWNDGH GYMFKYVVGL TGTLCVVVFV IIMSYARYKG LVGS

Arabidopsis Description

MRS2-2Magnesium transporter MRS2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.