Factsheet for Solyc01g103890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064171	Potato	nucleus	97.45	97.45
VIT_12s0034g02550.t01	Wine grape	plastid	75.46	71.96
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	62.96	71.77
KRH59146	Soybean	plastid	71.3	68.29
KRH43038	Soybean	plastid	70.6	67.78
CDY49260	Canola	plastid	64.58	65.03
Bra007423.1-P	Field mustard	plastid	64.35	64.8
CDY65607	Canola	plastid	64.35	64.8
AT3G58970.1	Thale cress	mitochondrion, plastid	65.05	64.45
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	61.81	63.72
Bra022373.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.81	63.57
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	61.81	63.57
TraesCS1D01G208700.1	Wheat	mitochondrion	65.51	60.86
TraesCS1A01G205400.1	Wheat	mitochondrion	65.05	60.56
TraesCS1B01G219000.1	Wheat	mitochondrion	65.51	60.47
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	64.81	58.46
Zm00001d029808_P001	Maize	mitochondrion, plastid	63.66	57.77
EER91996	Sorghum	mitochondrion	63.89	57.74
Zm00001d047388_P001	Maize	mitochondrion, plastid	63.19	57.35
CDY33715	Canola	cytosol	45.6	53.1
CDY39718	Canola	cytosol	46.06	52.65
AT4G28580.1	Thale cress	mitochondrion, plastid	48.15	50.98
Bra032683.1-P	Field mustard	plastid	40.05	50.44
Zm00001d027582_P001	Maize	plastid	49.07	48.4
OQU93276	Sorghum	plastid	48.38	48.38
Os03t0137700-01	Rice	plastid	46.76	46.44
Solyc09g065920.2.1	Tomato	nucleus	40.05	45.89
Solyc03g005390.2.1	Tomato	cytosol, peroxisome, vacuole	41.2	45.06
Solyc06g068490.2.1	Tomato	plastid	38.66	36.23
Solyc05g012220.2.1	Tomato	cytosol, peroxisome, plasma membrane	33.8	35.18
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	36.57	31.73
Solyc11g066660.1.1	Tomato	plastid	19.91	19.24

Protein Annotations

Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	UniProt:K4B1W4	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544
PANTHER:PTHR13890	PANTHER:PTHR13890:SF2	SUPFAM:SSF144083	EnsemblPlantsGene:Solyc01g103890.2	EnsemblPlants:Solyc01g103890.2.1	TMHMM:TMhelix
UniParc:UPI00027685F3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:92391106..92397625

Molecular Weight (calculated)

49112.4 Da

IEP (calculated)

5.526

GRAVY (calculated)

-0.178

Length

432 amino acids

Sequence
(BLAST)

001: MGKNQFSIRR RKKGMPPLPT PPVDNGEPQN SISLPVGTVK ASKKKVGGAR LWMRFDRWGQ SELNEWDKNS IIKRAGIPTR DLRILGPIFS HSSSILAREK
101: AMVVNLEFIR AIITAEEVLL LDPLRQEVLP FVDQLRQQLP HKSLLKVNGT STEQDDNEGH FPNAGHWLPV PEAVEGLQAE LPFEFQVLEI ALEVVCTFLD
201: SSVADLERDA YPVLDELAMN VSTKNLEQVR SLKSNLTRLL ARVQKVRDEI EHLLDDNEDM AQLYLTRKWI QNQQPETLLG TIVSNSPVPA APNLRRLNSA
301: RSRSGSLVSN HFNYYDVEDL EMLLEAYFMQ LEGTRNKILS VREYIDDTED YVNIQLDNQR NELIQLQLTL TIASFAVAVE TLIAGWFGMN IPCTLYHTEG
401: LFWPFVLCMT IGCIMLFLVI LGYARWKKLL GS

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.